LINC01280

Summary

LINC01280 (long intergenic non-protein coding RNA 1280, HGNC:50336) is a long non-coding RNA gene on chromosome 2q35.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50336
Approved symbol	LINC01280
Name	long intergenic non-protein coding RNA 1280
Location	2q35
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224391
Ensembl biotype	lncRNA
Entrez	101928232
RNAcentral	URS000075EA27 — lncRNA, 1617 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000449783, ENST00000793007, ENST00000793008, ENST00000793009, ENST00000793010, ENST00000793011, ENST00000793012, ENST00000793013

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000449783 — 4 exons

Exon	Start	End
ENSE00001639293	216590426	216591083
ENSE00001675143	216595184	216595243
ENSE00001729306	216598636	216599024
ENSE00001806329	216606862	216606938

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 80.93.

Top tissues by expression

23 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.93	silver quality
ventricular zone	UBERON:0003053	60.20	gold quality
ganglionic eminence	UBERON:0004023	58.64	gold quality
liver	UBERON:0002107	56.83	silver quality
blood	UBERON:0000178	53.35	silver quality
adult mammalian kidney	UBERON:0000082	51.31	silver quality
prefrontal cortex	UBERON:0000451	49.09	silver quality
skin of leg	UBERON:0001511	48.96	gold quality
nucleus accumbens	UBERON:0001882	46.01	silver quality
multicellular organism	UBERON:0000468	45.28	silver quality
putamen	UBERON:0001874	42.73	silver quality
islet of Langerhans	UBERON:0000006	42.23	silver quality
right atrium auricular region	UBERON:0006631	42.21	silver quality
heart left ventricle	UBERON:0002084	42.17	silver quality
testis	UBERON:0000473	41.46	silver quality
lung	UBERON:0002048	40.46	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.35	silver quality
esophagus mucosa	UBERON:0002469	39.11	silver quality
anterior cingulate cortex	UBERON:0009835	37.45	silver quality
omental fat pad	UBERON:0010414	37.16	silver quality
Brodmann (1909) area 9	UBERON:0013540	36.65	silver quality
subcutaneous adipose tissue	UBERON:0002190	36.30	silver quality
left testis	UBERON:0004533	30.07	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.