LINC01289

Summary

LINC01289 (long intergenic non-protein coding RNA 1289, HGNC:50354) is a long non-coding RNA gene on chromosome 8q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50354
Approved symbol	LINC01289
Name	long intergenic non-protein coding RNA 1289
Location	8q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253734
Ensembl biotype	lncRNA
Entrez	286184
RNAcentral	URS000075B8A5 — lncRNA, 3727 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000519550, ENST00000653366, ENST00000657029, ENST00000793164, ENST00000793165

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000519550 — 3 exons

Exon	Start	End
ENSE00002116947	63778449	63780922
ENSE00002119311	63769430	63769845
ENSE00002124678	63784680	63785501

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 79.99.

Top tissues by expression

186 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	79.99	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.33	gold quality
ganglionic eminence	UBERON:0004023	63.49	gold quality
epithelium of nasopharynx	UBERON:0001951	60.43	gold quality
cortical plate	UBERON:0005343	59.80	gold quality
left testis	UBERON:0004533	59.11	gold quality
testis	UBERON:0000473	58.43	gold quality
right testis	UBERON:0004534	57.85	gold quality
prefrontal cortex	UBERON:0000451	57.41	gold quality
gastrocnemius	UBERON:0001388	56.86	gold quality
vena cava	UBERON:0004087	55.02	gold quality
monocyte	CL:0000576	54.11	silver quality
right hemisphere of cerebellum	UBERON:0014890	52.19	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.90	gold quality
frontal cortex	UBERON:0001870	51.88	gold quality
muscle layer of sigmoid colon	UBERON:0035805	51.78	gold quality
rectum	UBERON:0001052	51.45	gold quality
neocortex	UBERON:0001950	51.08	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.57	gold quality
right frontal lobe	UBERON:0002810	50.44	gold quality
cerebral cortex	UBERON:0000956	48.79	gold quality
anterior cingulate cortex	UBERON:0009835	48.63	gold quality
cerebellar hemisphere	UBERON:0002245	48.17	gold quality
colon	UBERON:0001155	47.11	gold quality
upper leg skin	UBERON:0004262	46.99	silver quality
large intestine	UBERON:0000059	46.72	gold quality
primary visual cortex	UBERON:0002436	46.53	gold quality
adult organism	UBERON:0007023	46.48	gold quality
intestine	UBERON:0000160	46.45	gold quality
lateral nuclear group of thalamus	UBERON:0002736	46.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.