LINC01297

Summary

LINC01297 (long intergenic non-protein coding RNA 1297, HGNC:50443) is a long non-coding RNA gene on chromosome 14q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50443
Approved symbol	LINC01297
Name	long intergenic non-protein coding RNA 1297
Location	14q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000274827
Ensembl biotype	lncRNA
Entrez	115694671
RNAcentral	URS000194B0D2 — lncRNA, 3754 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000620186, ENST00000621052, ENST00000831912, ENST00000831913, ENST00000831914, ENST00000831915, ENST00000831916, ENST00000831917, ENST00000831918, ENST00000831919, ENST00000831920, ENST00000831921, ENST00000831922, ENST00000831923

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000620186 — 3 exons

Exon	Start	End
ENSE00003725881	19368193	19368258
ENSE00003747267	19375742	19375876
ENSE00004246979	19344329	19344634

Expression profiles

Bgee: expression breadth ubiquitous, 104 present calls, max score 85.42.

Top tissues by expression

104 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.42	gold quality
prostate gland	UBERON:0002367	81.66	gold quality
testis	UBERON:0000473	76.55	gold quality
right testis	UBERON:0004534	75.85	gold quality
left testis	UBERON:0004533	75.70	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.87	gold quality
corpus callosum	UBERON:0002336	66.64	gold quality
islet of Langerhans	UBERON:0000006	63.28	gold quality
calcaneal tendon	UBERON:0003701	63.24	gold quality
sural nerve	UBERON:0015488	61.20	silver quality
left uterine tube	UBERON:0001303	59.53	gold quality
liver	UBERON:0002107	59.03	gold quality
skeletal muscle tissue	UBERON:0001134	58.97	silver quality
urinary bladder	UBERON:0001255	57.34	gold quality
tonsil	UBERON:0002372	57.25	silver quality
blood	UBERON:0000178	57.02	gold quality
adrenal tissue	UBERON:0018303	56.73	gold quality
right lobe of liver	UBERON:0001114	55.69	gold quality
monocyte	CL:0000576	55.02	gold quality
ganglionic eminence	UBERON:0004023	55.00	silver quality
muscle of leg	UBERON:0001383	54.41	gold quality
multicellular organism	UBERON:0000468	53.73	gold quality
ectocervix	UBERON:0012249	53.57	gold quality
placenta	UBERON:0001987	53.55	gold quality
gastrocnemius	UBERON:0001388	53.32	gold quality
stromal cell of endometrium	CL:0002255	52.50	silver quality
endometrium	UBERON:0001295	52.32	gold quality
cortex of kidney	UBERON:0001225	52.29	gold quality
left coronary artery	UBERON:0001626	52.14	gold quality
saliva-secreting gland	UBERON:0001044	51.83	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.