LINC01299

Summary

LINC01299 (long intergenic non-protein coding RNA 1299, HGNC:27839) is a long non-coding RNA gene on chromosome 8q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27839
Approved symbol	LINC01299
Name	long intergenic non-protein coding RNA 1299
Location	8q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254081
Ensembl biotype	lncRNA
Entrez	286186
RNAcentral	URS0000759B1D — lncRNA, 2520 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000520902

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000520902 — 5 exons

Exon	Start	End
ENSE00002094881	65526738	65527585
ENSE00002116533	65562606	65562781
ENSE00002131649	65530576	65530609
ENSE00002135762	65534728	65534864
ENSE00002136085	65531415	65533124

Expression profiles

Bgee: expression breadth broad, 49 present calls, max score 73.92.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0918 / max 16.0084, expressed in 46 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
93349	0.0918	46

Top tissues by expression

49 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.92	silver quality
sural nerve	UBERON:0015488	68.43	silver quality
putamen	UBERON:0001874	66.51	gold quality
Ammon’s horn	UBERON:0001954	64.74	gold quality
substantia nigra	UBERON:0002038	64.58	gold quality
amygdala	UBERON:0001876	63.32	gold quality
temporal lobe	UBERON:0001871	63.14	gold quality
caudate nucleus	UBERON:0001873	60.87	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	60.86	gold quality
prefrontal cortex	UBERON:0000451	60.03	gold quality
Brodmann (1909) area 9	UBERON:0013540	59.80	gold quality
frontal cortex	UBERON:0001870	58.99	gold quality
brain	UBERON:0000955	58.46	gold quality
multicellular organism	UBERON:0000468	58.00	gold quality
cerebral cortex	UBERON:0000956	57.98	gold quality
right frontal lobe	UBERON:0002810	57.93	gold quality
primary visual cortex	UBERON:0002436	57.51	gold quality
nucleus accumbens	UBERON:0001882	56.87	gold quality
corpus callosum	UBERON:0002336	56.81	gold quality
hypothalamus	UBERON:0001898	56.31	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	55.94	gold quality
ganglionic eminence	UBERON:0004023	55.07	silver quality
superior frontal gyrus	UBERON:0002661	53.33	gold quality
anterior cingulate cortex	UBERON:0009835	51.80	gold quality
tibial nerve	UBERON:0001323	51.37	silver quality
blood	UBERON:0000178	49.57	gold quality
heart	UBERON:0000948	48.64	gold quality
skin of leg	UBERON:0001511	48.08	silver quality
skin of abdomen	UBERON:0001416	46.46	silver quality
right hemisphere of cerebellum	UBERON:0014890	46.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.