LINC01300

Summary

LINC01300 (long intergenic non-protein coding RNA 1300, HGNC:50460) is a long non-coding RNA gene on chromosome 8q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50460
Approved symbol	LINC01300
Name	long intergenic non-protein coding RNA 1300
Location	8q24.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253595
Ensembl biotype	lncRNA
Entrez	731779
RNAcentral	URS000075D86E — lncRNA, 810 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000518232, ENST00000521073, ENST00000788563

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000518232 — 3 exons

Exon	Start	End
ENSE00002093068	141344344	141344621
ENSE00002101641	141342958	141343215
ENSE00002107132	141342325	141342476

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 82.56.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0520 / max 19.9604, expressed in 14 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
91301	0.0520	14

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.56	gold quality
right coronary artery	UBERON:0001625	70.62	gold quality
popliteal artery	UBERON:0002250	68.62	gold quality
tibial artery	UBERON:0007610	68.61	gold quality
mucosa of stomach	UBERON:0001199	65.56	gold quality
blood	UBERON:0000178	64.28	gold quality
ectocervix	UBERON:0012249	63.72	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.42	gold quality
left coronary artery	UBERON:0001626	59.17	gold quality
lower esophagus	UBERON:0013473	57.95	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.90	gold quality
descending thoracic aorta	UBERON:0002345	57.70	gold quality
calcaneal tendon	UBERON:0003701	57.70	silver quality
skin of abdomen	UBERON:0001416	57.45	gold quality
zone of skin	UBERON:0000014	57.43	gold quality
skin of leg	UBERON:0001511	57.42	gold quality
muscle tissue	UBERON:0002385	57.12	gold quality
ascending aorta	UBERON:0001496	56.82	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	56.72	gold quality
thoracic aorta	UBERON:0001515	56.68	gold quality
skeletal muscle tissue	UBERON:0001134	56.50	gold quality
myometrium	UBERON:0001296	55.62	gold quality
monocyte	CL:0000576	55.43	gold quality
right lung	UBERON:0002167	55.40	gold quality
muscle layer of sigmoid colon	UBERON:0035805	54.83	gold quality
body of uterus	UBERON:0009853	54.57	gold quality
endocervix	UBERON:0000458	54.49	gold quality
body of stomach	UBERON:0001161	54.06	gold quality
stomach	UBERON:0000945	53.98	gold quality
esophagus	UBERON:0001043	53.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.00

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.