LINC01301

Summary

LINC01301 (long intergenic non-protein coding RNA 1301, HGNC:50464) is a long non-coding RNA gene on chromosome 8q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50464
Approved symbol	LINC01301
Name	long intergenic non-protein coding RNA 1301
Location	8q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251396
Ensembl biotype	lncRNA
Entrez	100505532
RNAcentral	URS000075A4D9 — lncRNA, 3485 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 44 — 44 lncRNA

ENST00000476425, ENST00000506428, ENST00000530033, ENST00000530725, ENST00000531654, ENST00000532232, ENST00000534117, ENST00000656414, ENST00000656656, ENST00000664011, ENST00000670404, ENST00000700917, ENST00000702097, ENST00000819657, ENST00000819658, ENST00000819660, ENST00000819662, ENST00000819663, ENST00000819664, ENST00000819665, ENST00000819666, ENST00000819667, ENST00000819668, ENST00000819669, ENST00000819670, ENST00000819671, ENST00000819672, ENST00000819673, ENST00000819674, ENST00000819675, ENST00000819676, ENST00000819677, ENST00000819678, ENST00000819679, ENST00000819680, ENST00000819681, ENST00000819682, ENST00000819683, ENST00000819684, ENST00000819685, ENST00000819686, ENST00000819687, ENST00000819688, ENST00000819689

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000476425 — 4 exons

Exon	Start	End
ENSE00002154029	60508647	60508762
ENSE00002171313	60404679	60405249
ENSE00002187729	60468072	60468192
ENSE00003931884	60516598	60516815

Expression profiles

Bgee: expression breadth ubiquitous, 157 present calls, max score 84.17.

FANTOM5 (CAGE): breadth broad, TPM avg 0.8043 / max 20.6839, expressed in 497 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
93255	0.8043	497

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.17	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.62	gold quality
ventricular zone	UBERON:0003053	79.29	gold quality
ganglionic eminence	UBERON:0004023	75.54	gold quality
colonic epithelium	UBERON:0000397	73.19	gold quality
amygdala	UBERON:0001876	71.82	gold quality
anterior cingulate cortex	UBERON:0009835	71.02	gold quality
right frontal lobe	UBERON:0002810	67.78	gold quality
prefrontal cortex	UBERON:0000451	67.44	gold quality
bone marrow cell	CL:0002092	66.56	silver quality
right testis	UBERON:0004534	66.23	gold quality
nucleus accumbens	UBERON:0001882	66.11	gold quality
hypothalamus	UBERON:0001898	66.05	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.92	gold quality
left testis	UBERON:0004533	65.79	gold quality
caudate nucleus	UBERON:0001873	65.76	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.24	gold quality
testis	UBERON:0000473	65.14	gold quality
omental fat pad	UBERON:0010414	65.01	gold quality
peritoneum	UBERON:0002358	64.94	gold quality
cortical plate	UBERON:0005343	64.74	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	64.54	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	64.41	gold quality
stromal cell of endometrium	CL:0002255	64.32	gold quality
putamen	UBERON:0001874	63.95	gold quality
neocortex	UBERON:0001950	63.87	gold quality
adipose tissue of abdominal region	UBERON:0007808	63.67	gold quality
sural nerve	UBERON:0015488	63.30	silver quality
frontal cortex	UBERON:0001870	62.53	gold quality
spinal cord	UBERON:0002240	62.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.37

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.