LINC01304

Summary

LINC01304 (long intergenic non-protein coding RNA 1304, HGNC:50472) is a long non-coding RNA gene on chromosome 2p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50472
Approved symbol	LINC01304
Name	long intergenic non-protein coding RNA 1304
Location	2p25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237401
Ensembl biotype	lncRNA
Entrez	100505964
RNAcentral	URS000075A6F3 — lncRNA, 2416 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000425949, ENST00000431730, ENST00000453880, ENST00000454455, ENST00000457371, ENST00000586530, ENST00000588264, ENST00000588796, ENST00000590981, ENST00000591066, ENST00000592948, ENST00000656255, ENST00000659600, ENST00000659848, ENST00000659923, ENST00000664559, ENST00000665736, ENST00000666829, ENST00000667525, ENST00000668043, ENST00000669961, ENST00000671382, ENST00000728822

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425949 — 5 exons

Exon	Start	End
ENSE00001620564	3959916	3960556
ENSE00001626147	3973545	3974019
ENSE00001667448	3968179	3968288
ENSE00001705308	3961770	3961894
ENSE00001794942	3959651	3959774

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 91.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0624 / max 63.1519, expressed in 4 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26724	0.0406	3
26725	0.0217	3

Top tissues by expression

210 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	91.42	gold quality
left testis	UBERON:0004533	86.32	gold quality
right testis	UBERON:0004534	85.24	gold quality
testis	UBERON:0000473	83.71	gold quality
adult organism	UBERON:0007023	82.81	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.12	gold quality
kidney epithelium	UBERON:0004819	79.96	gold quality
cardiac muscle of right atrium	UBERON:0003379	77.68	gold quality
left ventricle myocardium	UBERON:0006566	77.68	gold quality
epithelial cell of pancreas	CL:0000083	72.35	gold quality
myocardium	UBERON:0002349	69.54	gold quality
pancreatic ductal cell	CL:0002079	63.68	silver quality
hindlimb stylopod muscle	UBERON:0004252	61.27	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	60.79	gold quality
quadriceps femoris	UBERON:0001377	60.63	gold quality
vastus lateralis	UBERON:0001379	60.33	gold quality
muscle tissue	UBERON:0002385	60.12	gold quality
leukocyte	CL:0000738	59.36	gold quality
monocyte	CL:0000576	59.35	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	59.26	gold quality
sural nerve	UBERON:0015488	57.92	silver quality
ventricular zone	UBERON:0003053	57.90	silver quality
nasal cavity epithelium	UBERON:0005384	57.68	gold quality
ganglionic eminence	UBERON:0004023	57.62	silver quality
layer of synovial tissue	UBERON:0007616	56.48	gold quality
jejunal mucosa	UBERON:0000399	56.12	gold quality
cerebellar vermis	UBERON:0004720	55.92	gold quality
deltoid	UBERON:0001476	55.46	gold quality
tibialis anterior	UBERON:0001385	55.37	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.