LINC01309

Summary

LINC01309 (long intergenic non-protein coding RNA 1309, HGNC:50497) is a long non-coding RNA gene on chromosome 13q33.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50497
Approved symbol	LINC01309
Name	long intergenic non-protein coding RNA 1309
Location	13q33.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_l2_00007459
Ensembl gene	ENSG00000234551
Ensembl biotype	lncRNA
Entrez	104326190
RNAcentral	URS00007E3C36 — lncRNA, 504 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000444795, ENST00000667000

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444795 — 3 exons

Exon	Start	End
ENSE00001602359	103425200	103425321
ENSE00001718278	103427316	103428298
ENSE00003870662	103421250	103421388

Expression profiles

Bgee: expression breadth broad, 30 present calls, max score 82.11.

Top tissues by expression

30 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.11	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.74	gold quality
blood	UBERON:0000178	60.82	gold quality
liver	UBERON:0002107	60.27	gold quality
ganglionic eminence	UBERON:0004023	59.19	silver quality
testis	UBERON:0000473	57.21	gold quality
left testis	UBERON:0004533	56.91	gold quality
multicellular organism	UBERON:0000468	55.18	gold quality
right testis	UBERON:0004534	53.57	gold quality
pancreas	UBERON:0001264	52.24	silver quality
prefrontal cortex	UBERON:0000451	49.23	silver quality
islet of Langerhans	UBERON:0000006	49.05	silver quality
heart	UBERON:0000948	48.97	silver quality
monocyte	CL:0000576	48.68	silver quality
skin of leg	UBERON:0001511	47.84	silver quality
muscle of leg	UBERON:0001383	47.51	silver quality
heart left ventricle	UBERON:0002084	46.63	silver quality
tibial nerve	UBERON:0001323	46.39	gold quality
adult mammalian kidney	UBERON:0000082	45.92	silver quality
Ammon’s horn	UBERON:0001954	45.50	silver quality
vermiform appendix	UBERON:0001154	44.56	silver quality
gastrocnemius	UBERON:0001388	44.25	gold quality
placenta	UBERON:0001987	43.30	silver quality
hypothalamus	UBERON:0001898	43.08	silver quality
right ovary	UBERON:0002118	42.62	silver quality
prostate gland	UBERON:0002367	42.31	silver quality
tonsil	UBERON:0002372	40.56	silver quality
esophagus mucosa	UBERON:0002469	39.96	silver quality
ascending aorta	UBERON:0001496	39.17	silver quality
subcutaneous adipose tissue	UBERON:0002190	37.08	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.