LINC01311

Summary

LINC01311 (long intergenic non-protein coding RNA 1311, HGNC:50503) is a long non-coding RNA gene on chromosome 22q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50503
Approved symbol	LINC01311
Name	long intergenic non-protein coding RNA 1311
Location	22q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260924
Ensembl biotype	lncRNA
Entrez	100652736
RNAcentral	URS000075C74D — lncRNA, 1144 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000565162, ENST00000804544, ENST00000804545, ENST00000804546, ENST00000804547, ENST00000804548

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000565162 — 1 exons

Exon	Start	End
ENSE00004195961	19171395	19174110

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 70.25.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.1954 / max 145.9400, expressed in 1302 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
191037	4.1954	1302

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	70.25	gold quality
mucosa of transverse colon	UBERON:0004991	68.04	gold quality
stromal cell of endometrium	CL:0002255	65.04	gold quality
spleen	UBERON:0002106	65.02	gold quality
left ovary	UBERON:0002119	65.01	gold quality
metanephros cortex	UBERON:0010533	64.81	gold quality
cerebellar hemisphere	UBERON:0002245	64.73	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.67	gold quality
cerebellum	UBERON:0002037	64.62	gold quality
cerebellar cortex	UBERON:0002129	64.61	gold quality
body of uterus	UBERON:0009853	64.31	gold quality
right lobe of thyroid gland	UBERON:0001119	64.27	gold quality
prostate gland	UBERON:0002367	64.07	gold quality
ovary	UBERON:0000992	63.90	gold quality
left lobe of thyroid gland	UBERON:0001120	63.85	gold quality
lower esophagus muscularis layer	UBERON:0035833	63.82	gold quality
lower esophagus	UBERON:0013473	63.81	gold quality
sural nerve	UBERON:0015488	63.80	silver quality
thyroid gland	UBERON:0002046	63.64	gold quality
gastrocnemius	UBERON:0001388	63.44	gold quality
right coronary artery	UBERON:0001625	63.38	gold quality
right ovary	UBERON:0002118	63.33	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.30	gold quality
myometrium	UBERON:0001296	63.10	gold quality
esophagus	UBERON:0001043	63.01	gold quality
transverse colon	UBERON:0001157	63.00	gold quality
muscle of leg	UBERON:0001383	62.72	gold quality
left coronary artery	UBERON:0001626	62.67	gold quality
esophagus mucosa	UBERON:0002469	62.50	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	62.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.79

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Epigenetic transcripts of LINC01311 and hsa-miR-146a-5p regulate neural development in a cellular model of Alzheimer’s disease. (PMID:33830627)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.