LINC01312

Summary

LINC01312 (long intergenic non-protein coding RNA 1312, HGNC:28525) is a long non-coding RNA gene on chromosome 6q23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:28525
Approved symbol	LINC01312
Name	long intergenic non-protein coding RNA 1312
Location	6q23.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	MGC34034
Ensembl gene	ENSG00000223586
Ensembl biotype	lncRNA
Entrez	154089
RNAcentral	URS000075C1E2 — lncRNA, 3517 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000412745, ENST00000456347, ENST00000662850, ENST00000669925, ENST00000795610, ENST00000795611, ENST00000795612, ENST00000795613, ENST00000795614, ENST00000795615, ENST00000795616, ENST00000795617, ENST00000795618

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412745 — 3 exons

Exon	Start	End
ENSE00001673637	133837593	133837724
ENSE00004180513	133851197	133852098
ENSE00004180517	133837165	133837222

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 81.40.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.40	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.76	gold quality
sural nerve	UBERON:0015488	63.59	gold quality
smooth muscle tissue	UBERON:0001135	61.86	gold quality
colonic epithelium	UBERON:0000397	61.51	silver quality
calcaneal tendon	UBERON:0003701	61.23	gold quality
cortex of kidney	UBERON:0001225	58.42	gold quality
right testis	UBERON:0004534	58.06	gold quality
monocyte	CL:0000576	57.69	gold quality
kidney	UBERON:0002113	57.50	gold quality
endocervix	UBERON:0000458	57.08	gold quality
liver	UBERON:0002107	56.91	gold quality
testis	UBERON:0000473	56.60	gold quality
blood	UBERON:0000178	56.14	gold quality
adult mammalian kidney	UBERON:0000082	56.07	gold quality
left testis	UBERON:0004533	55.60	gold quality
right lobe of liver	UBERON:0001114	55.13	gold quality
placenta	UBERON:0001987	54.77	gold quality
adenohypophysis	UBERON:0002196	53.96	gold quality
metanephros cortex	UBERON:0010533	53.46	gold quality
ovary	UBERON:0000992	52.80	gold quality
left ovary	UBERON:0002119	52.77	gold quality
fallopian tube	UBERON:0003889	52.06	gold quality
muscle of leg	UBERON:0001383	50.98	gold quality
endometrium	UBERON:0001295	50.80	silver quality
pituitary gland	UBERON:0000007	50.66	gold quality
islet of Langerhans	UBERON:0000006	50.53	gold quality
right ovary	UBERON:0002118	50.23	gold quality
urinary bladder	UBERON:0001255	50.01	silver quality
lung	UBERON:0002048	49.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.29

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.