LINC01322

Summary

LINC01322 (long intergenic non-protein coding RNA 1322, HGNC:50528) is a long non-coding RNA gene on chromosome 3q26.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50528
Approved symbol	LINC01322
Name	long intergenic non-protein coding RNA 1322
Location	3q26.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RUS
Ensembl gene	ENSG00000244128
Ensembl biotype	lncRNA
Entrez	103695433
RNAcentral	URS00022AE7EE — lncRNA, 765 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 96 — 96 lncRNA

ENST00000470138, ENST00000494915, ENST00000496693, ENST00000498616, ENST00000651449, ENST00000652830, ENST00000653747, ENST00000653773, ENST00000653864, ENST00000653967, ENST00000654069, ENST00000654261, ENST00000654580, ENST00000654990, ENST00000655586, ENST00000656293, ENST00000657326, ENST00000659430, ENST00000660780, ENST00000661151, ENST00000661419, ENST00000661555, ENST00000663897, ENST00000664292, ENST00000664927, ENST00000665240, ENST00000665369, ENST00000666398, ENST00000666522, ENST00000668542, ENST00000669761, ENST00000670150, ENST00000670338, ENST00000670403, ENST00000670463, ENST00000670918, ENST00000670998, ENST00000685671, ENST00000686578, ENST00000688054, ENST00000688911, ENST00000689289, ENST00000689692, ENST00000692442, ENST00000692780, ENST00000700910, ENST00000701546, ENST00000702055, ENST00000702310, ENST00000771418, ENST00000771419, ENST00000771420, ENST00000771421, ENST00000771422, ENST00000771423, ENST00000771424, ENST00000771425, ENST00000771426, ENST00000771427, ENST00000771428, ENST00000771429, ENST00000771430, ENST00000771431, ENST00000771432, ENST00000771433, ENST00000771434, ENST00000771435, ENST00000771436, ENST00000771437, ENST00000771438, ENST00000771439, ENST00000771440, ENST00000771441, ENST00000771442, ENST00000771443, ENST00000771444, ENST00000771445, ENST00000771446, ENST00000771447, ENST00000771448, ENST00000771449, ENST00000771450, ENST00000771451, ENST00000771452, ENST00000771453, ENST00000771454, ENST00000771455, ENST00000771456, ENST00000771457, ENST00000771458, ENST00000771459, ENST00000771460, ENST00000771461, ENST00000771462, ENST00000771463, ENST00000771464

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000470138 — 4 exons

Exon	Start	End
ENSE00001875659	165460539	165460632
ENSE00001890380	165206960	165207159
ENSE00001923399	165580859	165581028
ENSE00001958162	165382795	165382907

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 86.56.

FANTOM5 (CAGE): breadth broad, TPM avg 1.6809 / max 206.8766, expressed in 242 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter ID	TPM avg	Samples expressed
39648	0.6152	112
39644	0.4735	92
39645	0.2310	86
39647	0.1629	73
39651	0.0770	35
39649	0.0477	27
39650	0.0432	22
39652	0.0302	12

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
Ammon’s horn	UBERON:0001954	86.56	gold quality
primary visual cortex	UBERON:0002436	85.15	gold quality
putamen	UBERON:0001874	84.12	gold quality
caudate nucleus	UBERON:0001873	83.52	gold quality
amygdala	UBERON:0001876	83.15	gold quality
temporal lobe	UBERON:0001871	82.69	gold quality
nucleus accumbens	UBERON:0001882	82.69	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.33	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.96	gold quality
bone marrow cell	CL:0002092	78.94	gold quality
colonic epithelium	UBERON:0000397	78.74	gold quality
lower esophagus muscularis layer	UBERON:0035833	78.67	gold quality
lower esophagus	UBERON:0013473	78.65	gold quality
superior frontal gyrus	UBERON:0002661	78.43	gold quality
cerebral cortex	UBERON:0000956	78.40	gold quality
substantia nigra	UBERON:0002038	78.12	gold quality
hypothalamus	UBERON:0001898	77.96	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	77.67	gold quality
anterior cingulate cortex	UBERON:0009835	77.63	gold quality
sural nerve	UBERON:0015488	76.44	gold quality
lower esophagus mucosa	UBERON:0035834	76.41	gold quality
prefrontal cortex	UBERON:0000451	76.39	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	76.32	gold quality
frontal cortex	UBERON:0001870	76.23	gold quality
right frontal lobe	UBERON:0002810	76.03	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.97	gold quality
brain	UBERON:0000955	74.82	gold quality
left uterine tube	UBERON:0001303	73.22	gold quality
cortical plate	UBERON:0005343	71.06	gold quality
esophagus	UBERON:0001043	70.19	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-HCAD-35	yes	48.96
E-ANND-3	yes	4.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.