LINC01331

Summary

LINC01331 (long intergenic non-protein coding RNA 1331, HGNC:50538) is a long non-coding RNA gene on chromosome 5q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50538
Approved symbol	LINC01331
Name	long intergenic non-protein coding RNA 1331
Location	5q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248673
Ensembl biotype	lncRNA
Entrez	104310351
RNAcentral	URS0002A14894 — lncRNA, 1229 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 48 — 48 lncRNA

ENST00000506612, ENST00000507781, ENST00000507890, ENST00000651573, ENST00000657957, ENST00000663633, ENST00000715757, ENST00000715758, ENST00000830052, ENST00000830053, ENST00000830054, ENST00000830055, ENST00000830056, ENST00000830057, ENST00000830058, ENST00000830059, ENST00000830060, ENST00000830061, ENST00000830062, ENST00000830063, ENST00000830064, ENST00000830065, ENST00000830066, ENST00000830067, ENST00000830068, ENST00000830069, ENST00000830070, ENST00000830071, ENST00000830072, ENST00000830073, ENST00000830074, ENST00000830075, ENST00000830076, ENST00000830077, ENST00000830078, ENST00000830079, ENST00000830080, ENST00000830081, ENST00000830082, ENST00000830083, ENST00000830084, ENST00000830085, ENST00000830086, ENST00000830087, ENST00000830088, ENST00000830089, ENST00000830090, ENST00000850665

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000506612 — 2 exons

Exon	Start	End
ENSE00004244108	74334556	74334766
ENSE00004244129	74326273	74328285

Expression profiles

Bgee: expression breadth broad, 87 present calls, max score 69.27.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0340 / max 14.3536, expressed in 16 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62064	0.0340	16

Top tissues by expression

87 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right hemisphere of cerebellum	UBERON:0014890	69.27	gold quality
ventricular zone	UBERON:0003053	67.66	gold quality
superior frontal gyrus	UBERON:0002661	67.03	gold quality
cerebellar hemisphere	UBERON:0002245	66.40	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.11	gold quality
prefrontal cortex	UBERON:0000451	64.07	gold quality
frontal cortex	UBERON:0001870	63.56	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	63.43	gold quality
right frontal lobe	UBERON:0002810	62.61	gold quality
ganglionic eminence	UBERON:0004023	61.37	gold quality
cerebral cortex	UBERON:0000956	60.86	gold quality
temporal lobe	UBERON:0001871	59.00	gold quality
amygdala	UBERON:0001876	58.90	gold quality
anterior cingulate cortex	UBERON:0009835	57.75	gold quality
body of stomach	UBERON:0001161	56.79	gold quality
stomach	UBERON:0000945	56.22	gold quality
brain	UBERON:0000955	55.65	gold quality
primary visual cortex	UBERON:0002436	55.60	gold quality
gall bladder	UBERON:0002110	53.87	gold quality
monocyte	CL:0000576	53.74	gold quality
blood	UBERON:0000178	53.35	silver quality
lung	UBERON:0002048	52.80	gold quality
urinary bladder	UBERON:0001255	51.10	gold quality
multicellular organism	UBERON:0000468	51.04	gold quality
Ammon’s horn	UBERON:0001954	50.53	gold quality
corpus callosum	UBERON:0002336	49.50	gold quality
nucleus accumbens	UBERON:0001882	49.43	gold quality
body of uterus	UBERON:0009853	49.03	gold quality
muscle of leg	UBERON:0001383	48.98	gold quality
hindlimb stylopod muscle	UBERON:0004252	48.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.