LINC01333

Summary

LINC01333 (long intergenic non-protein coding RNA 1333, HGNC:50539) is a long non-coding RNA gene on chromosome 5q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50539
Approved symbol	LINC01333
Name	long intergenic non-protein coding RNA 1333
Location	5q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249343
Ensembl biotype	lncRNA
Entrez	101929082
RNAcentral	URS0002A1481C — lncRNA, 769 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000508083, ENST00000512458, ENST00000651656, ENST00000654284, ENST00000654749, ENST00000655255, ENST00000657940, ENST00000657950, ENST00000659118, ENST00000659684, ENST00000662472, ENST00000665644, ENST00000667290, ENST00000667820, ENST00000669685, ENST00000671086, ENST00000830264, ENST00000830265, ENST00000830266, ENST00000830267, ENST00000830268, ENST00000830269, ENST00000830270, ENST00000830271

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000508083 — 4 exons

Exon	Start	End
ENSE00002030598	74322479	74323008
ENSE00002069448	74325812	74325937
ENSE00002075430	74328223	74328318
ENSE00003856999	74324407	74324518

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 92.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0036 / max 2.7065, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
203587	0.0036	3

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.64	gold quality
sperm	CL:0000019	83.42	gold quality
left testis	UBERON:0004533	75.88	gold quality
testis	UBERON:0000473	73.01	gold quality
right testis	UBERON:0004534	72.54	gold quality
ganglionic eminence	UBERON:0004023	61.08	gold quality
ventricular zone	UBERON:0003053	60.30	gold quality
sural nerve	UBERON:0015488	59.74	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	58.97	silver quality
right hemisphere of cerebellum	UBERON:0014890	56.02	gold quality
prefrontal cortex	UBERON:0000451	54.69	gold quality
endothelial cell	CL:0000115	53.97	gold quality
monocyte	CL:0000576	53.92	gold quality
cerebellar hemisphere	UBERON:0002245	52.91	gold quality
amygdala	UBERON:0001876	51.33	gold quality
right frontal lobe	UBERON:0002810	51.00	gold quality
Brodmann (1909) area 9	UBERON:0013540	50.50	gold quality
frontal cortex	UBERON:0001870	49.82	gold quality
muscle of leg	UBERON:0001383	49.25	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.25	gold quality
neocortex	UBERON:0001950	48.94	gold quality
gastrocnemius	UBERON:0001388	48.75	gold quality
islet of Langerhans	UBERON:0000006	48.40	gold quality
right atrium auricular region	UBERON:0006631	47.24	gold quality
cerebral cortex	UBERON:0000956	47.07	gold quality
anterior cingulate cortex	UBERON:0009835	46.92	gold quality
adult organism	UBERON:0007023	46.70	gold quality
tibial nerve	UBERON:0001323	46.41	gold quality
temporal lobe	UBERON:0001871	45.91	gold quality
stomach	UBERON:0000945	45.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.