LINC01337

Summary

LINC01337 (long intergenic non-protein coding RNA 1337, HGNC:50546) is a long non-coding RNA gene on chromosome 5q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50546
Approved symbol	LINC01337
Name	long intergenic non-protein coding RNA 1337
Location	5q14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00009713
Ensembl gene	ENSG00000251221
Ensembl biotype	lncRNA
Entrez	103689917
RNAcentral	URS00007E3D82 — lncRNA, 443 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000515871

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515871 — 2 exons

Exon	Start	End
ENSE00002055725	80622408	80622524
ENSE00002073558	80608623	80608945

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 85.24.

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.24	gold quality
right testis	UBERON:0004534	78.05	gold quality
left testis	UBERON:0004533	77.01	gold quality
testis	UBERON:0000473	76.43	gold quality
ganglionic eminence	UBERON:0004023	70.41	gold quality
bone marrow cell	CL:0002092	70.26	silver quality
quadriceps femoris	UBERON:0001377	67.86	gold quality
bone marrow	UBERON:0002371	65.44	gold quality
lymph node	UBERON:0000029	64.36	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
thymus	UBERON:0002370	62.87	silver quality
right lobe of liver	UBERON:0001114	62.00	gold quality
liver	UBERON:0002107	61.53	gold quality
skeletal muscle tissue	UBERON:0001134	60.82	silver quality
lower esophagus mucosa	UBERON:0035834	60.56	gold quality
granulocyte	CL:0000094	60.24	gold quality
vermiform appendix	UBERON:0001154	60.03	gold quality
blood	UBERON:0000178	59.86	gold quality
gall bladder	UBERON:0002110	59.36	gold quality
monocyte	CL:0000576	58.98	gold quality
spleen	UBERON:0002106	58.65	gold quality
duodenum	UBERON:0002114	58.10	gold quality
superior frontal gyrus	UBERON:0002661	57.84	gold quality
mucosa of transverse colon	UBERON:0004991	57.82	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.07	gold quality
tonsil	UBERON:0002372	56.45	gold quality
placenta	UBERON:0001987	56.40	gold quality
prefrontal cortex	UBERON:0000451	56.06	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.06	gold quality
small intestine	UBERON:0002108	55.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.