LINC01340

Summary

LINC01340 (long intergenic non-protein coding RNA 1340, HGNC:50550) is a long non-coding RNA gene on chromosome 5q15.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50550
Approved symbol	LINC01340
Name	long intergenic non-protein coding RNA 1340
Location	5q15
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250331
Ensembl biotype	lncRNA
Entrez	102546227
RNAcentral	URS000075CACB — lncRNA, 729 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 36 — 36 lncRNA

ENST00000502324, ENST00000504012, ENST00000513288, ENST00000656559, ENST00000657058, ENST00000663326, ENST00000666358, ENST00000668472, ENST00000668863, ENST00000669006, ENST00000715761, ENST00000746238, ENST00000746239, ENST00000746240, ENST00000746241, ENST00000746242, ENST00000746243, ENST00000746244, ENST00000746245, ENST00000746246, ENST00000746247, ENST00000746248, ENST00000746249, ENST00000746250, ENST00000746251, ENST00000746252, ENST00000746253, ENST00000746254, ENST00000746255, ENST00000746256, ENST00000746257, ENST00000746258, ENST00000746259, ENST00000746260, ENST00000746261, ENST00000746262

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502324 — 3 exons

Exon	Start	End
ENSE00002066957	97881420	97881567
ENSE00002074478	97899638	97899799
ENSE00003851854	97922131	97922857

Expression profiles

Bgee: expression breadth ubiquitous, 107 present calls, max score 87.75.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1947 / max 59.6584, expressed in 20 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
57736	0.1909	20
203634	0.0038	2

Top tissues by expression

107 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.75	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.07	gold quality
bone marrow cell	CL:0002092	70.34	silver quality
colonic epithelium	UBERON:0000397	66.11	silver quality
sural nerve	UBERON:0015488	62.42	gold quality
ganglionic eminence	UBERON:0004023	61.42	gold quality
bone marrow	UBERON:0002371	59.62	silver quality
tonsil	UBERON:0002372	59.39	gold quality
skeletal muscle tissue	UBERON:0001134	56.68	gold quality
liver	UBERON:0002107	54.69	silver quality
blood	UBERON:0000178	54.32	silver quality
placenta	UBERON:0001987	53.65	gold quality
prefrontal cortex	UBERON:0000451	53.47	gold quality
monocyte	CL:0000576	52.89	silver quality
lymph node	UBERON:0000029	52.28	gold quality
corpus callosum	UBERON:0002336	51.50	silver quality
myometrium	UBERON:0001296	51.34	gold quality
calcaneal tendon	UBERON:0003701	50.64	gold quality
duodenum	UBERON:0002114	50.04	gold quality
frontal cortex	UBERON:0001870	49.06	gold quality
pancreas	UBERON:0001264	48.95	gold quality
vermiform appendix	UBERON:0001154	48.89	gold quality
islet of Langerhans	UBERON:0000006	48.70	gold quality
smooth muscle tissue	UBERON:0001135	48.57	gold quality
hindlimb stylopod muscle	UBERON:0004252	48.55	gold quality
urinary bladder	UBERON:0001255	48.54	gold quality
right lobe of liver	UBERON:0001114	48.47	silver quality
muscle of leg	UBERON:0001383	48.30	silver quality
endometrium	UBERON:0001295	48.29	gold quality
adrenal tissue	UBERON:0018303	48.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.