LINC01341

Summary

LINC01341 (long intergenic non-protein coding RNA 1341, HGNC:49457) is a long non-coding RNA gene on chromosome 1q44.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49457
Approved symbol	LINC01341
Name	long intergenic non-protein coding RNA 1341
Location	1q44
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227953
Ensembl biotype	lncRNA
Entrez	149134
RNAcentral	URS000075DDBF — lncRNA, 1123 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 14 lncRNA, 1 retained_intron

ENST00000419361, ENST00000421003, ENST00000426089, ENST00000505748, ENST00000509202, ENST00000652908, ENST00000655681, ENST00000662358, ENST00000663201, ENST00000670093, ENST00000786908, ENST00000786909, ENST00000786910, ENST00000786911, ENST00000786912

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419361 — 6 exons

Exon	Start	End
ENSE00001646391	246780384	246780583
ENSE00001767448	246790446	246790846
ENSE00001806178	246792057	246792385
ENSE00002057665	246789508	246789698
ENSE00002070026	246776979	246777102
ENSE00004163944	246776056	246776268

Expression profiles

Bgee: expression breadth ubiquitous, 175 present calls, max score 86.18.

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	86.18	gold quality
sural nerve	UBERON:0015488	84.04	gold quality
cerebellar hemisphere	UBERON:0002245	82.76	gold quality
cerebellar cortex	UBERON:0002129	82.67	gold quality
right hemisphere of cerebellum	UBERON:0014890	82.14	gold quality
cerebellum	UBERON:0002037	81.58	gold quality
kidney epithelium	UBERON:0004819	79.10	gold quality
tendon of biceps brachii	UBERON:0008188	78.56	silver quality
tibial nerve	UBERON:0001323	78.43	gold quality
right lobe of liver	UBERON:0001114	77.66	gold quality
metanephros cortex	UBERON:0010533	76.46	gold quality
metanephros	UBERON:0000081	76.08	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.89	gold quality
right uterine tube	UBERON:0001302	75.75	gold quality
primary visual cortex	UBERON:0002436	75.13	gold quality
nucleus accumbens	UBERON:0001882	75.09	gold quality
left ovary	UBERON:0002119	75.04	gold quality
right testis	UBERON:0004534	74.98	gold quality
Brodmann (1909) area 23	UBERON:0013554	74.92	silver quality
middle temporal gyrus	UBERON:0002771	74.66	silver quality
mucosa of stomach	UBERON:0001199	74.63	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	74.63	gold quality
right ovary	UBERON:0002118	74.58	gold quality
muscle layer of sigmoid colon	UBERON:0035805	74.27	gold quality
prostate gland	UBERON:0002367	74.19	gold quality
left testis	UBERON:0004533	74.05	gold quality
apex of heart	UBERON:0002098	73.77	gold quality
putamen	UBERON:0001874	73.70	gold quality
adenohypophysis	UBERON:0002196	73.52	gold quality
stromal cell of endometrium	CL:0002255	73.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.