LINC01342

Summary

LINC01342 (long intergenic non-protein coding RNA 1342, HGNC:50551) is a long non-coding RNA gene on chromosome 1p36.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50551
Approved symbol	LINC01342
Name	long intergenic non-protein coding RNA 1342
Location	1p36.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223823
Ensembl biotype	lncRNA
Entrez	254099
RNAcentral	URS000075ABDA — lncRNA, 1640 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000416774

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416774 — 3 exons

Exon	Start	End
ENSE00001682245	1142739	1144056
ENSE00001733002	1137017	1137110
ENSE00001788407	1140825	1141032

Expression profiles

Bgee: expression breadth broad, 64 present calls, max score 74.42.

Top tissues by expression

174 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	74.42	silver quality
mucosa of transverse colon	UBERON:0004991	69.09	gold quality
bone marrow cell	CL:0002092	67.73	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	67.55	gold quality
myocardium	UBERON:0002349	66.94	gold quality
biceps brachii	UBERON:0001507	65.12	gold quality
amniotic fluid	UBERON:0000173	65.08	gold quality
oocyte	CL:0000023	65.00	gold quality
vena cava	UBERON:0004087	64.38	gold quality
mammary duct	UBERON:0001765	64.19	gold quality
tendon	UBERON:0000043	63.83	gold quality
pylorus	UBERON:0001166	63.57	gold quality
nipple	UBERON:0002030	63.27	gold quality
aorta	UBERON:0000947	63.23	gold quality
saphenous vein	UBERON:0007318	63.11	gold quality
pharyngeal mucosa	UBERON:0000355	63.09	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	62.99	gold quality
cerebellar vermis	UBERON:0004720	62.96	gold quality
substantia nigra pars compacta	UBERON:0001965	62.91	gold quality
pericardium	UBERON:0002407	62.89	gold quality
trabecular bone tissue	UBERON:0002483	62.87	gold quality
coronary artery	UBERON:0001621	62.83	gold quality
corpus callosum	UBERON:0002336	62.79	gold quality
inferior vagus X ganglion	UBERON:0005363	62.77	gold quality
esophagus squamous epithelium	UBERON:0006920	62.74	gold quality
nucleus accumbens	UBERON:0001882	62.73	gold quality
tendon of biceps brachii	UBERON:0008188	62.73	gold quality
adrenal cortex	UBERON:0001235	62.70	gold quality
subthalamic nucleus	UBERON:0001906	62.58	gold quality
thymus	UBERON:0002370	62.56	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.50

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01342 promotes the progression of ovarian cancer by absorbing microRNA-30c-2-3p to upregulate HIF3A. (PMID:31595977)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.