LINC01344

Summary

LINC01344 (long intergenic non-protein coding RNA 1344, HGNC:50554) is a long non-coding RNA gene on chromosome 1q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50554
Approved symbol	LINC01344
Name	long intergenic non-protein coding RNA 1344
Location	1q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228918
Ensembl biotype	lncRNA
Entrez	400799
RNAcentral	URS000075D72E — lncRNA, 585 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000420760, ENST00000449842, ENST00000608183, ENST00000653755, ENST00000658912, ENST00000663078, ENST00000702781, ENST00000756661, ENST00000756662, ENST00000756663, ENST00000756664, ENST00000756665, ENST00000756666, ENST00000756667, ENST00000756668, ENST00000756669, ENST00000756670, ENST00000756671, ENST00000756672, ENST00000756673, ENST00000756674, ENST00000756675, ENST00000756676, ENST00000756677, ENST00000756678, ENST00000756679, ENST00000756680, ENST00000756681, ENST00000756682, ENST00000756683, ENST00000756684

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420760 — 4 exons

Exon	Start	End
ENSE00001603061	182313490	182313785
ENSE00003706409	182203885	182204105
ENSE00004106901	182190120	182190239
ENSE00004106920	182329133	182329212

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 81.70.

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.70	gold quality
bone marrow cell	CL:0002092	69.61	silver quality
skeletal muscle tissue	UBERON:0001134	69.19	gold quality
testis	UBERON:0000473	66.87	gold quality
right testis	UBERON:0004534	66.70	gold quality
left testis	UBERON:0004533	66.42	gold quality
liver	UBERON:0002107	64.45	gold quality
ventricular zone	UBERON:0003053	57.28	silver quality
sural nerve	UBERON:0015488	56.68	silver quality
blood	UBERON:0000178	56.39	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.71	silver quality
monocyte	CL:0000576	55.23	gold quality
right lobe of liver	UBERON:0001114	55.12	gold quality
urinary bladder	UBERON:0001255	54.87	gold quality
lymph node	UBERON:0000029	54.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.03	silver quality
uterine cervix	UBERON:0000002	51.49	silver quality
minor salivary gland	UBERON:0001830	51.24	gold quality
saliva-secreting gland	UBERON:0001044	51.23	gold quality
muscle of leg	UBERON:0001383	50.17	gold quality
gastrocnemius	UBERON:0001388	50.08	gold quality
multicellular organism	UBERON:0000468	49.77	gold quality
islet of Langerhans	UBERON:0000006	48.91	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.66	gold quality
right ovary	UBERON:0002118	48.59	gold quality
stomach	UBERON:0000945	47.32	gold quality
prefrontal cortex	UBERON:0000451	47.27	silver quality
myometrium	UBERON:0001296	46.99	silver quality
body of stomach	UBERON:0001161	46.44	gold quality
pancreas	UBERON:0001264	46.37	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.36

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.