LINC01346

Summary

LINC01346 (long intergenic non-protein coding RNA 1346, HGNC:50563) is a long non-coding RNA gene on chromosome 1p36.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50563
Approved symbol	LINC01346
Name	long intergenic non-protein coding RNA 1346
Location	1p36.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233304
Ensembl biotype	lncRNA
Entrez	728716
RNAcentral	URS000075EFAD — lncRNA, 568 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000412674, ENST00000456897, ENST00000635619, ENST00000664502, ENST00000816721, ENST00000816722

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412674 — 3 exons

Exon	Start	End
ENSE00001594912	3952253	3955262
ENSE00001726188	3940994	3941143
ENSE00001784163	3940617	3940698

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 80.23.

Top tissues by expression

201 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.23	gold quality
right hemisphere of cerebellum	UBERON:0014890	64.76	gold quality
ventricular zone	UBERON:0003053	62.46	gold quality
prefrontal cortex	UBERON:0000451	62.21	gold quality
ganglionic eminence	UBERON:0004023	61.07	gold quality
right frontal lobe	UBERON:0002810	60.41	gold quality
anterior cingulate cortex	UBERON:0009835	60.25	gold quality
Brodmann (1909) area 9	UBERON:0013540	60.13	gold quality
hypothalamus	UBERON:0001898	60.06	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.75	gold quality
cerebellar hemisphere	UBERON:0002245	58.26	gold quality
seminal vesicle	UBERON:0000998	58.14	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	57.95	gold quality
rectum	UBERON:0001052	57.54	gold quality
frontal cortex	UBERON:0001870	57.52	gold quality
neocortex	UBERON:0001950	57.51	gold quality
adenohypophysis	UBERON:0002196	56.03	gold quality
smooth muscle tissue	UBERON:0001135	55.18	gold quality
amygdala	UBERON:0001876	54.90	gold quality
body of uterus	UBERON:0009853	54.67	gold quality
cerebral cortex	UBERON:0000956	54.34	gold quality
lower esophagus muscularis layer	UBERON:0035833	54.32	gold quality
pituitary gland	UBERON:0000007	53.87	gold quality
prostate gland	UBERON:0002367	53.13	gold quality
muscle of leg	UBERON:0001383	52.14	gold quality
forebrain	UBERON:0001890	51.71	gold quality
gastrocnemius	UBERON:0001388	51.61	gold quality
monocyte	CL:0000576	51.38	silver quality
lower esophagus mucosa	UBERON:0035834	51.23	gold quality
esophagus	UBERON:0001043	51.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.