LINC01350

Summary

LINC01350 (long intergenic non-protein coding RNA 1350, HGNC:50575) is a long non-coding RNA gene on chromosome 1q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50575
Approved symbol	LINC01350
Name	long intergenic non-protein coding RNA 1350
Location	1q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228309
Ensembl biotype	lncRNA
Entrez	101929093
RNAcentral	URS000075CC71 — lncRNA, 622 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000436955, ENST00000439633, ENST00000608417, ENST00000609066, ENST00000654367, ENST00000654596, ENST00000655092, ENST00000655693, ENST00000655976, ENST00000657435, ENST00000662341, ENST00000665129, ENST00000665770, ENST00000665999, ENST00000666202, ENST00000667194, ENST00000667796, ENST00000667960, ENST00000669189, ENST00000669266, ENST00000670065, ENST00000670075, ENST00000785775, ENST00000785776, ENST00000785777, ENST00000785778, ENST00000785779, ENST00000785780

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436955 — 5 exons

Exon	Start	End
ENSE00001640413	185626492	185626555
ENSE00001675350	185622727	185622839
ENSE00001702119	185621461	185621586
ENSE00004161916	185628407	185628527
ENSE00004161922	185607142	185607401

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 93.89.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0409 / max 42.8531, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
16326	0.0409	4

Top tissues by expression

199 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.89	gold quality
left testis	UBERON:0004533	93.67	gold quality
right testis	UBERON:0004534	92.28	gold quality
testis	UBERON:0000473	90.16	gold quality
sperm	CL:0000019	84.30	gold quality
colonic epithelium	UBERON:0000397	80.70	gold quality
bone marrow cell	CL:0002092	78.59	gold quality
islet of Langerhans	UBERON:0000006	71.11	gold quality
ganglionic eminence	UBERON:0004023	66.89	gold quality
kidney epithelium	UBERON:0004819	65.26	gold quality
adult organism	UBERON:0007023	64.40	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	57.96	gold quality
cerebellar vermis	UBERON:0004720	56.78	gold quality
myocardium	UBERON:0002349	55.96	gold quality
cardiac muscle of right atrium	UBERON:0003379	55.06	gold quality
monocyte	CL:0000576	54.96	gold quality
tonsil	UBERON:0002372	54.84	silver quality
pancreatic ductal cell	CL:0002079	54.27	silver quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
epithelial cell of pancreas	CL:0000083	53.95	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.90	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.80	gold quality
metanephros cortex	UBERON:0010533	52.65	gold quality
calcaneal tendon	UBERON:0003701	52.28	silver quality
buccal mucosa cell	CL:0002336	52.14	gold quality
right adrenal gland cortex	UBERON:0035827	51.88	gold quality
quadriceps femoris	UBERON:0001377	50.60	gold quality
vastus lateralis	UBERON:0001379	49.89	gold quality
tendon of biceps brachii	UBERON:0008188	49.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.