LINC01353

Summary

LINC01353 (long intergenic non-protein coding RNA 1353, HGNC:50580) is a long non-coding RNA gene on chromosome 1q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50580
Approved symbol	LINC01353
Name	long intergenic non-protein coding RNA 1353
Location	1q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231507
Ensembl biotype	lncRNA
Entrez	100506775
RNAcentral	URS000075B295 — lncRNA, 777 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 57 — 57 lncRNA

ENST00000412772, ENST00000433008, ENST00000657300, ENST00000662282, ENST00000666545, ENST00000688046, ENST00000688999, ENST00000701093, ENST00000702761, ENST00000779116, ENST00000779117, ENST00000779118, ENST00000779119, ENST00000779120, ENST00000779121, ENST00000779122, ENST00000779123, ENST00000779124, ENST00000779125, ENST00000779126, ENST00000779127, ENST00000779128, ENST00000779129, ENST00000779130, ENST00000779131, ENST00000779132, ENST00000779133, ENST00000779134, ENST00000779135, ENST00000779136, ENST00000779137, ENST00000779138, ENST00000779139, ENST00000779140, ENST00000779141, ENST00000779142, ENST00000779143, ENST00000779144, ENST00000779145, ENST00000779146, ENST00000779147, ENST00000779148, ENST00000779149, ENST00000779150, ENST00000779151, ENST00000779152, ENST00000779153, ENST00000779154, ENST00000779155, ENST00000779156, ENST00000779157, ENST00000779158, ENST00000779159, ENST00000779160, ENST00000779161, ENST00000779162, ENST00000779163

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412772 — 4 exons

Exon	Start	End
ENSE00001768140	203287066	203287311
ENSE00001774269	203287989	203288306
ENSE00004149272	203286475	203286722
ENSE00004149317	203288505	203288805

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 97.85.

FANTOM5 (CAGE): breadth broad, TPM avg 1.0204 / max 249.1897, expressed in 198 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
7866	0.5735	150
7865	0.2188	125
7864	0.1775	45
7867	0.0506	25

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	97.85	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.06	gold quality
quadriceps femoris	UBERON:0001377	85.10	gold quality
cerebellar vermis	UBERON:0004720	82.71	gold quality
granulocyte	CL:0000094	82.20	gold quality
bone marrow	UBERON:0002371	77.25	gold quality
bone marrow cell	CL:0002092	76.94	gold quality
leukocyte	CL:0000738	74.45	gold quality
monocyte	CL:0000576	74.16	gold quality
colonic epithelium	UBERON:0000397	72.51	silver quality
blood	UBERON:0000178	71.10	gold quality
ventricular zone	UBERON:0003053	70.80	gold quality
skeletal muscle tissue	UBERON:0001134	69.65	gold quality
tonsil	UBERON:0002372	67.51	gold quality
lymph node	UBERON:0000029	66.91	gold quality
spleen	UBERON:0002106	66.71	gold quality
cortical plate	UBERON:0005343	66.09	gold quality
muscle tissue	UBERON:0002385	65.56	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.20	gold quality
muscle of leg	UBERON:0001383	64.57	gold quality
gastrocnemius	UBERON:0001388	64.43	gold quality
putamen	UBERON:0001874	64.02	gold quality
apex of heart	UBERON:0002098	63.12	gold quality
rectum	UBERON:0001052	62.98	gold quality
gall bladder	UBERON:0002110	62.53	gold quality
right adrenal gland cortex	UBERON:0035827	62.32	gold quality
vermiform appendix	UBERON:0001154	61.94	gold quality
islet of Langerhans	UBERON:0000006	61.87	gold quality
nucleus accumbens	UBERON:0001882	61.49	gold quality
caudate nucleus	UBERON:0001873	60.78	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.