LINC01356

Summary

LINC01356 (long intergenic non-protein coding RNA 1356, HGNC:50587) is a long non-coding RNA gene on chromosome 1p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50587
Approved symbol	LINC01356
Name	long intergenic non-protein coding RNA 1356
Location	1p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	LIMp27
Ensembl gene	ENSG00000215866
Ensembl biotype	lncRNA
Entrez	100996702
RNAcentral	URS000075D770 — lncRNA, 1824 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000401018, ENST00000433505, ENST00000449572, ENST00000661136, ENST00000667852, ENST00000691250, ENST00000765279, ENST00000765280, ENST00000765281, ENST00000765282, ENST00000765283, ENST00000765284, ENST00000765285

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000401018 — 7 exons

Exon	Start	End
ENSE00001424977	112825513	112825672
ENSE00001545941	112820174	112820541
ENSE00001545943	112828477	112828511
ENSE00001545945	112848954	112849050
ENSE00001545946	112849680	112850643
ENSE00001611185	112823653	112823754
ENSE00001704585	112840488	112840580

Expression profiles

Bgee: expression breadth ubiquitous, 164 present calls, max score 83.22.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3730 / max 31.5932, expressed in 163 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13884	0.1867	68
13885	0.1864	103

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	83.22	gold quality
sperm	CL:0000019	80.00	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.57	gold quality
oocyte	CL:0000023	79.29	gold quality
buccal mucosa cell	CL:0002336	76.42	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	72.32	gold quality
ventricular zone	UBERON:0003053	71.56	gold quality
vena cava	UBERON:0004087	70.82	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.19	silver quality
gingival epithelium	UBERON:0001949	69.28	gold quality
cardia of stomach	UBERON:0001162	68.84	gold quality
nipple	UBERON:0002030	68.64	gold quality
mucosa of paranasal sinus	UBERON:0005030	68.54	gold quality
cortical plate	UBERON:0005343	68.45	gold quality
pericardium	UBERON:0002407	68.24	silver quality
body of tongue	UBERON:0011876	68.24	gold quality
thymus	UBERON:0002370	68.13	silver quality
pharyngeal mucosa	UBERON:0000355	68.12	gold quality
trachea	UBERON:0003126	68.11	gold quality
tongue	UBERON:0001723	68.04	gold quality
superior surface of tongue	UBERON:0007371	68.03	gold quality
layer of synovial tissue	UBERON:0007616	68.02	silver quality
cerebellar vermis	UBERON:0004720	67.99	gold quality
substantia nigra pars reticulata	UBERON:0001966	67.87	gold quality
lateral globus pallidus	UBERON:0002476	67.82	gold quality
pylorus	UBERON:0001166	67.75	gold quality
substantia nigra pars compacta	UBERON:0001965	67.72	gold quality
left testis	UBERON:0004533	67.71	gold quality
synovial joint	UBERON:0002217	67.70	gold quality
pons	UBERON:0000988	67.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.