LINC01364

Summary

LINC01364 (long intergenic non-protein coding RNA 1364, HGNC:50599) is a long non-coding RNA gene on chromosome 1p22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50599
Approved symbol	LINC01364
Name	long intergenic non-protein coding RNA 1364
Location	1p22.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.29
Ensembl gene	ENSG00000227290
Ensembl biotype	lncRNA
Entrez	100505768
RNAcentral	URS000075B9B0 — lncRNA, 919 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000452509, ENST00000766653, ENST00000766654

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452509 — 4 exons

Exon	Start	End
ENSE00001726170	87353521	87353867
ENSE00001730022	87357576	87357678
ENSE00001793610	87354844	87355198
ENSE00001801082	87371569	87371683

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 95.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0158 / max 13.0815, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
13116	0.0158	5

Top tissues by expression

189 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.64	silver quality
sperm	CL:0000019	87.45	gold quality
cardiac muscle of right atrium	UBERON:0003379	79.60	gold quality
left ventricle myocardium	UBERON:0006566	79.57	gold quality
kidney epithelium	UBERON:0004819	77.50	gold quality
left testis	UBERON:0004533	76.84	gold quality
right testis	UBERON:0004534	76.09	gold quality
testis	UBERON:0000473	74.55	gold quality
epithelial cell of pancreas	CL:0000083	63.96	gold quality
myocardium	UBERON:0002349	63.71	gold quality
ganglionic eminence	UBERON:0004023	61.36	gold quality
nasal cavity epithelium	UBERON:0005384	58.45	gold quality
buccal mucosa cell	CL:0002336	57.42	gold quality
cerebellar vermis	UBERON:0004720	57.39	gold quality
adult organism	UBERON:0007023	56.25	gold quality
quadriceps femoris	UBERON:0001377	55.69	gold quality
inferior vagus X ganglion	UBERON:0005363	55.57	gold quality
vastus lateralis	UBERON:0001379	55.50	gold quality
layer of synovial tissue	UBERON:0007616	55.28	gold quality
monocyte	CL:0000576	54.86	gold quality
saphenous vein	UBERON:0007318	54.44	gold quality
tibialis anterior	UBERON:0001385	54.43	silver quality
pericardium	UBERON:0002407	54.35	gold quality
dorsal root ganglion	UBERON:0000044	54.06	gold quality
pancreatic ductal cell	CL:0002079	53.90	silver quality
pylorus	UBERON:0001166	53.86	gold quality
nipple	UBERON:0002030	53.82	gold quality
renal medulla	UBERON:0000362	53.81	gold quality
medulla oblongata	UBERON:0001896	53.71	gold quality
superior vestibular nucleus	UBERON:0007227	53.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.