LINC01366

Summary

LINC01366 (long intergenic non-protein coding RNA 1366, HGNC:27416) is a long non-coding RNA gene on chromosome 5q35.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27416
Approved symbol	LINC01366
Name	long intergenic non-protein coding RNA 1366
Location	5q35.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235172
Ensembl biotype	lncRNA
Entrez	257358
RNAcentral	URS000075C480 — lncRNA, 2242 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000436248, ENST00000518357, ENST00000521471, ENST00000653905, ENST00000655223, ENST00000662473, ENST00000662612, ENST00000665008, ENST00000669914, ENST00000770366, ENST00000770367, ENST00000770368, ENST00000770369, ENST00000770370

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000436248 — 3 exons

Exon	Start	End
ENSE00001656546	170333134	170334090
ENSE00002069661	170332848	170332937
ENSE00003868325	170331364	170331577

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 73.82.

FANTOM5 (CAGE): breadth broad, TPM avg 4.0499 / max 544.5868, expressed in 217 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
60121	2.9055	106
60141	0.3353	137
60124	0.2623	57
60123	0.1875	53
60125	0.1805	44
60122	0.1174	37
60126	0.0614	22

Top tissues by expression

222 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	73.82	silver quality
gingival epithelium	UBERON:0001949	71.66	gold quality
parotid gland	UBERON:0001831	71.57	gold quality
esophagus squamous epithelium	UBERON:0006920	71.04	gold quality
bone marrow cell	CL:0002092	70.94	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	70.39	gold quality
gingiva	UBERON:0001828	68.98	gold quality
sperm	CL:0000019	67.64	gold quality
endothelial cell	CL:0000115	67.38	gold quality
superficial temporal artery	UBERON:0001614	64.83	gold quality
epithelium of nasopharynx	UBERON:0001951	62.52	gold quality
bone marrow	UBERON:0002371	62.03	gold quality
nasal cavity epithelium	UBERON:0005384	61.85	gold quality
cartilage tissue	UBERON:0002418	61.11	gold quality
blood	UBERON:0000178	59.13	gold quality
ganglionic eminence	UBERON:0004023	58.78	gold quality
lower lobe of lung	UBERON:0008949	58.73	silver quality
Brodmann (1909) area 23	UBERON:0013554	57.99	gold quality
mucosa of sigmoid colon	UBERON:0004993	57.81	gold quality
tonsil	UBERON:0002372	57.72	gold quality
amniotic fluid	UBERON:0000173	57.65	gold quality
germinal epithelium of ovary	UBERON:0001304	57.62	gold quality
granulocyte	CL:0000094	57.36	gold quality
lymph node	UBERON:0000029	57.08	gold quality
primary visual cortex	UBERON:0002436	56.74	gold quality
middle temporal gyrus	UBERON:0002771	56.46	gold quality
trabecular bone tissue	UBERON:0002483	56.32	gold quality
leukocyte	CL:0000738	55.09	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.91	gold quality
monocyte	CL:0000576	54.07	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.