LINC01370

Summary

LINC01370 (long intergenic non-protein coding RNA 1370, HGNC:50608) is a long non-coding RNA gene on chromosome 20q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50608
Approved symbol	LINC01370
Name	long intergenic non-protein coding RNA 1370
Location	20q12
Locus type	RNA, long non-coding
Status	Approved
Aliases	HI-LNC25
Ensembl gene	ENSG00000237767
Ensembl biotype	lncRNA
OMIM	617038
Entrez	100505663
RNAcentral	URS000075E146 — lncRNA, 838 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 31 — 31 lncRNA

ENST00000423153, ENST00000432633, ENST00000445606, ENST00000656861, ENST00000664271, ENST00000665038, ENST00000667567, ENST00000668047, ENST00000669216, ENST00000669808, ENST00000670996, ENST00000701153, ENST00000716850, ENST00000722236, ENST00000722237, ENST00000722238, ENST00000722239, ENST00000722240, ENST00000722241, ENST00000722242, ENST00000722243, ENST00000722244, ENST00000722245, ENST00000722246, ENST00000722247, ENST00000722248, ENST00000722249, ENST00000722250, ENST00000722251, ENST00000722252, ENST00000722253

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423153 — 6 exons

Exon	Start	End
ENSE00001641626	40031545	40031687
ENSE00001688807	40043472	40043889
ENSE00001745176	40034161	40034279
ENSE00001802542	40006263	40006358
ENSE00003859990	40004280	40004491
ENSE00004030888	40030725	40031060

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 84.03.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0272 / max 14.0054, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
184602	0.0272	5

Top tissues by expression

66 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	84.03	gold quality
islet of Langerhans	UBERON:0000006	83.94	gold quality
right lobe of liver	UBERON:0001114	80.23	gold quality
spleen	UBERON:0002106	79.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.46	gold quality
pancreas	UBERON:0001264	65.79	gold quality
right atrium auricular region	UBERON:0006631	63.22	gold quality
myometrium	UBERON:0001296	61.60	gold quality
multicellular organism	UBERON:0000468	57.63	gold quality
bone marrow	UBERON:0002371	56.14	silver quality
monocyte	CL:0000576	55.85	gold quality
body of pancreas	UBERON:0001150	55.42	gold quality
blood	UBERON:0000178	55.23	gold quality
duodenum	UBERON:0002114	52.46	gold quality
heart	UBERON:0000948	51.85	gold quality
adrenal tissue	UBERON:0018303	50.59	gold quality
calcaneal tendon	UBERON:0003701	50.01	silver quality
kidney	UBERON:0002113	49.77	gold quality
left ovary	UBERON:0002119	49.00	gold quality
lymph node	UBERON:0000029	48.85	silver quality
small intestine	UBERON:0002108	48.79	gold quality
muscle of leg	UBERON:0001383	48.74	gold quality
ovary	UBERON:0000992	47.63	gold quality
amygdala	UBERON:0001876	47.04	gold quality
gastrocnemius	UBERON:0001388	46.94	silver quality
intestine	UBERON:0000160	46.77	gold quality
vermiform appendix	UBERON:0001154	46.73	silver quality
ascending aorta	UBERON:0001496	46.73	gold quality
prefrontal cortex	UBERON:0000451	46.14	silver quality
fundus of stomach	UBERON:0001160	45.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.