LINC01388

Summary

LINC01388 (long intergenic non-protein coding RNA 1388, HGNC:50660) is a long non-coding RNA gene on chromosome 9p24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50660
Approved symbol	LINC01388
Name	long intergenic non-protein coding RNA 1388
Location	9p24.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_l2_00029888
Ensembl gene	ENSG00000231808
Ensembl biotype	lncRNA
Entrez	101929179
RNAcentral	URS00026A2555 — lncRNA, 971 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000416242, ENST00000427318, ENST00000435421, ENST00000652777, ENST00000662781, ENST00000845745, ENST00000845749, ENST00000845751

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416242 — 2 exons

Exon	Start	End
ENSE00004273345	112713	113067
ENSE00004273346	113694	113798

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 78.38.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
testis	UBERON:0000473	78.38	gold quality
left testis	UBERON:0004533	78.09	gold quality
right testis	UBERON:0004534	77.72	gold quality
bone marrow cell	CL:0002092	72.04	silver quality
skeletal muscle tissue	UBERON:0001134	67.46	gold quality
primary visual cortex	UBERON:0002436	67.22	gold quality
spleen	UBERON:0002106	66.99	gold quality
lymph node	UBERON:0000029	63.80	gold quality
bone marrow	UBERON:0002371	63.72	gold quality
vermiform appendix	UBERON:0001154	62.62	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.07	gold quality
gall bladder	UBERON:0002110	61.66	gold quality
prefrontal cortex	UBERON:0000451	60.80	gold quality
heart left ventricle	UBERON:0002084	59.51	gold quality
islet of Langerhans	UBERON:0000006	58.28	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.14	gold quality
Ammon’s horn	UBERON:0001954	57.85	gold quality
right lung	UBERON:0002167	57.51	gold quality
tonsil	UBERON:0002372	57.22	gold quality
substantia nigra	UBERON:0002038	56.79	gold quality
muscle of leg	UBERON:0001383	56.64	gold quality
heart	UBERON:0000948	56.61	gold quality
cortex of kidney	UBERON:0001225	56.45	gold quality
duodenum	UBERON:0002114	56.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.02	gold quality
urinary bladder	UBERON:0001255	55.87	gold quality
calcaneal tendon	UBERON:0003701	55.47	gold quality
kidney	UBERON:0002113	55.21	gold quality
omental fat pad	UBERON:0010414	55.16	gold quality
gastrocnemius	UBERON:0001388	55.08	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.32

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.