LINC01389

Summary

LINC01389 (long intergenic non-protein coding RNA 1389, HGNC:50661) is a long non-coding RNA gene on chromosome 1p33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50661
Approved symbol	LINC01389
Name	long intergenic non-protein coding RNA 1389
Location	1p33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225762
Ensembl biotype	lncRNA
Entrez	102724077
RNAcentral	URS00007E3818 — lncRNA, 869 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000420876, ENST00000828805, ENST00000828806, ENST00000828807, ENST00000828808, ENST00000828809, ENST00000828810, ENST00000828811, ENST00000828812, ENST00000828813, ENST00000828814

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420876 — 3 exons

Exon	Start	End
ENSE00001642433	47380928	47381143
ENSE00001735913	47386248	47386356
ENSE00001784857	47408320	47408477

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 88.31.

FANTOM5 (CAGE): breadth broad, TPM avg 1.9723 / max 54.2742, expressed in 831 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
12238	1.7693	802
12237	0.1161	28
12236	0.0869	27

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.25	gold quality
mucosa of transverse colon	UBERON:0004991	84.34	gold quality
colonic epithelium	UBERON:0000397	77.44	gold quality
rectum	UBERON:0001052	75.41	gold quality
sural nerve	UBERON:0015488	71.70	gold quality
transverse colon	UBERON:0001157	71.31	gold quality
ganglionic eminence	UBERON:0004023	70.44	gold quality
right testis	UBERON:0004534	67.97	gold quality
cortical plate	UBERON:0005343	67.51	gold quality
monocyte	CL:0000576	67.25	gold quality
left testis	UBERON:0004533	67.06	gold quality
ventricular zone	UBERON:0003053	66.99	gold quality
leukocyte	CL:0000738	66.82	gold quality
testis	UBERON:0000473	66.42	gold quality
stromal cell of endometrium	CL:0002255	66.15	gold quality
mucosa of stomach	UBERON:0001199	65.41	gold quality
endometrium	UBERON:0001295	65.32	gold quality
colon	UBERON:0001155	65.13	gold quality
tibial nerve	UBERON:0001323	64.39	gold quality
cerebellar cortex	UBERON:0002129	64.29	gold quality
cerebellar hemisphere	UBERON:0002245	64.26	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.25	gold quality
intestine	UBERON:0000160	64.10	gold quality
cerebellum	UBERON:0002037	64.09	gold quality
right lobe of liver	UBERON:0001114	62.95	gold quality
lymph node	UBERON:0000029	62.80	gold quality
liver	UBERON:0002107	62.57	gold quality
right hemisphere of cerebellum	UBERON:0014890	62.43	gold quality
tibial artery	UBERON:0007610	62.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.