LINC01393

Summary

LINC01393 (long intergenic non-protein coding RNA 1393, HGNC:50669) is a long non-coding RNA gene on chromosome 7q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50669
Approved symbol	LINC01393
Name	long intergenic non-protein coding RNA 1393
Location	7q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225535
Ensembl biotype	lncRNA
Entrez	102724386
RNAcentral	URS000052A30B — lncRNA, 1187 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000419905, ENST00000435981, ENST00000460471, ENST00000467677, ENST00000659423, ENST00000660905, ENST00000668211, ENST00000669990

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419905 — 5 exons

Exon	Start	End
ENSE00001592995	115122178	115122247
ENSE00001636242	115078998	115079109
ENSE00001710848	115125443	115125791
ENSE00001746434	115118733	115118825
ENSE00001768723	115118935	115119056

Expression profiles

Bgee: expression breadth ubiquitous, 142 present calls, max score 87.72.

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	87.72	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.60	silver quality
sural nerve	UBERON:0015488	70.77	gold quality
bone marrow cell	CL:0002092	66.17	silver quality
ganglionic eminence	UBERON:0004023	65.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	65.34	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.30	gold quality
mucosa of stomach	UBERON:0001199	59.89	gold quality
leukocyte	CL:0000738	58.85	gold quality
monocyte	CL:0000576	58.39	gold quality
right lobe of liver	UBERON:0001114	55.85	gold quality
granulocyte	CL:0000094	55.73	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.70	gold quality
vermiform appendix	UBERON:0001154	54.80	gold quality
calcaneal tendon	UBERON:0003701	53.73	gold quality
stromal cell of endometrium	CL:0002255	53.37	silver quality
omental fat pad	UBERON:0010414	53.15	gold quality
peritoneum	UBERON:0002358	53.11	gold quality
smooth muscle tissue	UBERON:0001135	53.07	gold quality
spleen	UBERON:0002106	52.97	gold quality
lymph node	UBERON:0000029	52.87	gold quality
adipose tissue of abdominal region	UBERON:0007808	52.45	gold quality
subcutaneous adipose tissue	UBERON:0002190	52.36	gold quality
endothelial cell	CL:0000115	52.03	gold quality
prefrontal cortex	UBERON:0000451	51.78	gold quality
descending thoracic aorta	UBERON:0002345	50.84	gold quality
ectocervix	UBERON:0012249	50.76	gold quality
right adrenal gland cortex	UBERON:0035827	50.70	gold quality
right coronary artery	UBERON:0001625	50.59	gold quality
gall bladder	UBERON:0002110	50.59	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.