LINC01396

Summary

LINC01396 (long intergenic non-protein coding RNA 1396, HGNC:50675) is a long non-coding RNA gene on chromosome 4p16.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50675
Approved symbol	LINC01396
Name	long intergenic non-protein coding RNA 1396
Location	4p16.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273396
Ensembl biotype	lncRNA
Entrez	103695434
RNAcentral	URS000050DD0B — lncRNA, 527 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000609099, ENST00000652410, ENST00000662851, ENST00000724736

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609099 — 4 exons

Exon	Start	End
ENSE00003707701	4844437	4844554
ENSE00003708372	4850707	4850827
ENSE00003709137	4846439	4846540
ENSE00003710734	4847324	4847509

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 65.78.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	65.78	silver quality
bone marrow	UBERON:0002371	62.74	gold quality
left testis	UBERON:0004533	61.06	gold quality
right testis	UBERON:0004534	60.82	gold quality
testis	UBERON:0000473	60.36	gold quality
cortical plate	UBERON:0005343	58.50	silver quality
ganglionic eminence	UBERON:0004023	58.00	gold quality
monocyte	CL:0000576	55.88	gold quality
stromal cell of endometrium	CL:0002255	55.87	gold quality
smooth muscle tissue	UBERON:0001135	52.17	gold quality
blood	UBERON:0000178	51.72	silver quality
muscle of leg	UBERON:0001383	50.95	gold quality
prefrontal cortex	UBERON:0000451	49.79	gold quality
islet of Langerhans	UBERON:0000006	49.78	gold quality
gastrocnemius	UBERON:0001388	48.36	gold quality
right lobe of thyroid gland	UBERON:0001119	47.91	gold quality
lung	UBERON:0002048	46.49	silver quality
adrenal gland	UBERON:0002369	45.64	gold quality
multicellular organism	UBERON:0000468	45.63	gold quality
left coronary artery	UBERON:0001626	45.51	gold quality
myometrium	UBERON:0001296	45.30	gold quality
descending thoracic aorta	UBERON:0002345	45.25	gold quality
cerebellar cortex	UBERON:0002129	45.00	silver quality
cerebellar hemisphere	UBERON:0002245	44.98	silver quality
tibial artery	UBERON:0007610	44.73	silver quality
body of pancreas	UBERON:0001150	44.62	silver quality
heart left ventricle	UBERON:0002084	44.55	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.54	silver quality
heart	UBERON:0000948	44.44	gold quality
endometrium	UBERON:0001295	44.13	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.