LINC01398

Summary

LINC01398 (long intergenic non-protein coding RNA 1398, HGNC:50678) is a long non-coding RNA gene on chromosome 1p33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50678
Approved symbol	LINC01398
Name	long intergenic non-protein coding RNA 1398
Location	1p33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224863
Ensembl biotype	lncRNA
Entrez	101929651
RNAcentral	URS00001B0AEF — lncRNA, 1129 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 3 lncRNA, 1 retained_intron

ENST00000416581, ENST00000634819, ENST00000656737, ENST00000663451

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416581 — 3 exons

Exon	Start	End
ENSE00001599952	46446673	46447145
ENSE00001700467	46447452	46447889
ENSE00001773754	46449487	46449704

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 78.67.

Top tissues by expression

172 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.67	gold quality
granulocyte	CL:0000094	59.71	gold quality
leukocyte	CL:0000738	58.01	gold quality
upper leg skin	UBERON:0004262	55.11	silver quality
left testis	UBERON:0004533	51.28	gold quality
vermiform appendix	UBERON:0001154	51.15	gold quality
right testis	UBERON:0004534	50.86	gold quality
skin of hip	UBERON:0001554	50.82	silver quality
testis	UBERON:0000473	50.34	gold quality
prefrontal cortex	UBERON:0000451	48.09	silver quality
islet of Langerhans	UBERON:0000006	47.86	gold quality
muscle of leg	UBERON:0001383	47.57	silver quality
blood	UBERON:0000178	47.55	gold quality
metanephros cortex	UBERON:0010533	46.89	gold quality
gastrocnemius	UBERON:0001388	46.70	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.03	gold quality
left lobe of thyroid gland	UBERON:0001120	45.18	gold quality
cortex of kidney	UBERON:0001225	45.14	silver quality
cerebellar cortex	UBERON:0002129	45.01	silver quality
thyroid gland	UBERON:0002046	44.95	gold quality
cerebellar hemisphere	UBERON:0002245	44.91	silver quality
pancreas	UBERON:0001264	44.80	gold quality
right lobe of thyroid gland	UBERON:0001119	44.27	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.05	silver quality
caecum	UBERON:0001153	43.79	gold quality
skin of abdomen	UBERON:0001416	43.69	gold quality
adult mammalian kidney	UBERON:0000082	43.43	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
metanephros	UBERON:0000081	43.10	silver quality
ascending aorta	UBERON:0001496	43.04	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.