LINC01399

Summary

LINC01399 (long intergenic non-protein coding RNA 1399, HGNC:50680) is a long non-coding RNA gene on chromosome 22q12.3.

At a glance

• Gene type: non-coding (transcribed_processed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50680
Approved symbol	LINC01399
Name	long intergenic non-protein coding RNA 1399
Location	22q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233080
Ensembl biotype	transcribed_processed_pseudogene
Entrez	104310353
RNAcentral	URS00003145A3 — lncRNA, 648 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_processed_pseudogene

ENST00000458450

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000458450 — 1 exons

Exon	Start	End
ENSE00001644378	35194699	35194942

Expression profiles

Bgee: expression breadth ubiquitous, 252 present calls, max score 99.18.

FANTOM5 (CAGE): breadth broad, TPM avg 2.2196 / max 57.0998, expressed in 369 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
193789	2.2196	369

Top tissues by expression

272 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
diaphragm	UBERON:0001103	99.18	gold quality
left ventricle myocardium	UBERON:0006566	99.05	silver quality
cardiac muscle of right atrium	UBERON:0003379	98.67	silver quality
myocardium	UBERON:0002349	98.66	silver quality
vastus lateralis	UBERON:0001379	98.23	silver quality
quadriceps femoris	UBERON:0001377	97.92	silver quality
triceps brachii	UBERON:0001509	97.75	silver quality
body of tongue	UBERON:0011876	97.52	silver quality
biceps brachii	UBERON:0001507	97.34	silver quality
gluteal muscle	UBERON:0002000	97.15	silver quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	96.69	silver quality
heart right ventricle	UBERON:0002080	96.18	silver quality
vena cava	UBERON:0004087	96.08	gold quality
tongue	UBERON:0001723	96.07	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	95.90	silver quality
jejunum	UBERON:0002115	95.78	silver quality
oral cavity	UBERON:0000167	95.67	silver quality
upper arm skin	UBERON:0004263	95.64	silver quality
tongue squamous epithelium	UBERON:0006919	95.62	silver quality
jejunal mucosa	UBERON:0000399	95.50	silver quality
deltoid	UBERON:0001476	95.44	silver quality
mucosa of sigmoid colon	UBERON:0004993	95.40	silver quality
cervix epithelium	UBERON:0004801	95.26	silver quality
renal medulla	UBERON:0000362	95.16	silver quality
lateral nuclear group of thalamus	UBERON:0002736	95.15	gold quality
pharyngeal mucosa	UBERON:0000355	95.12	gold quality
tibialis anterior	UBERON:0001385	95.01	silver quality
superior surface of tongue	UBERON:0007371	94.64	gold quality
oviduct epithelium	UBERON:0004804	94.49	silver quality
periodontal ligament	UBERON:0008266	94.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.