LINC01400

Summary

LINC01400 (long intergenic non-protein coding RNA 1400, HGNC:50681) is a long non-coding RNA gene on chromosome 9p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50681
Approved symbol	LINC01400
Name	long intergenic non-protein coding RNA 1400
Location	9p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00015805
Ensembl gene	ENSG00000232920
Ensembl biotype	lncRNA
Entrez	107080554
RNAcentral	URS0000508F94 — lncRNA, 964 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000426358, ENST00000569583, ENST00000816586, ENST00000816587, ENST00000816588, ENST00000816589

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426358 — 2 exons

Exon	Start	End
ENSE00001653499	37075183	37075792
ENSE00001700071	37073531	37073867

Expression profiles

Bgee: expression breadth broad, 13 present calls, max score 53.26.

Top tissues by expression

13 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lymph node	UBERON:0000029	53.26	gold quality
prefrontal cortex	UBERON:0000451	51.70	gold quality
blood	UBERON:0000178	48.88	silver quality
endometrium	UBERON:0001295	48.35	gold quality
vermiform appendix	UBERON:0001154	47.67	silver quality
superior frontal gyrus	UBERON:0002661	44.75	silver quality
left adrenal gland	UBERON:0001234	44.66	silver quality
caudate nucleus	UBERON:0001873	42.69	silver quality
ascending aorta	UBERON:0001496	42.02	silver quality
thoracic aorta	UBERON:0001515	40.81	silver quality
small intestine Peyer’s patch	UBERON:0003454	40.17	silver quality
pituitary gland	UBERON:0000007	36.05	silver quality
left lobe of thyroid gland	UBERON:0001120	35.91	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.