LINC01402

Summary

LINC01402 (long intergenic non-protein coding RNA 1402, HGNC:50685) is a long non-coding RNA gene on chromosome Xq24.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50685
Approved symbol	LINC01402
Name	long intergenic non-protein coding RNA 1402
Location	Xq24
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00017087
Entrez	104797536
RNAcentral	URS00004BD43D — lncRNA, 279 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000927824 (X:120120963 G>A,T), RS1002051265 (X:120119349 A>G), RS1002114263 (X:120117228 C>A), RS1002336556 (X:120119004 G>T), RS1004397492 (X:120119576 C>G), RS1005515651 (X:120117617 C>A), RS1008432815 (X:120120556 C>T), RS1009402920 (X:120118702 T>C), RS1012233199 (X:120121662 A>T), RS1013308996 (X:120119884 G>A,T), RS1013651540 (X:120119435 G>A), RS1017136222 (X:120119936 C>A,T), RS1017144504 (X:120119584 C>T), RS1018149458 (X:120117351 T>G), RS1021047564 (X:120120573 G>A,C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

CTD chemical–gene interactions

1 total (human), top 1 by PubMed support.

Chemical	Actions (top 5)	PubMed papers
Tobacco Smoke Pollution	decreases expression	1

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.