LINC01404

Summary

LINC01404 (long intergenic non-protein coding RNA 1404, HGNC:50689) is a long non-coding RNA gene on chromosome 12q24.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50689
Approved symbol	LINC01404
Name	long intergenic non-protein coding RNA 1404
Location	12q24.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000258240
Ensembl biotype	lncRNA
Entrez	105369980
RNAcentral	URS0000A775FA — lncRNA, 600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000546852, ENST00000548329, ENST00000654505, ENST00000659394, ENST00000666565

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546852 — 4 exons

Exon	Start	End
ENSE00002367707	110957570	110957812
ENSE00002372161	110956239	110956336
ENSE00002381701	110957392	110957480
ENSE00002383716	110951683	110951842

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 85.74.

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.74	gold quality
sural nerve	UBERON:0015488	80.92	gold quality
primary visual cortex	UBERON:0002436	74.72	gold quality
substantia nigra	UBERON:0002038	65.28	gold quality
hypothalamus	UBERON:0001898	64.50	gold quality
superior frontal gyrus	UBERON:0002661	64.08	gold quality
prefrontal cortex	UBERON:0000451	63.36	gold quality
frontal cortex	UBERON:0001870	62.95	gold quality
putamen	UBERON:0001874	62.19	gold quality
ganglionic eminence	UBERON:0004023	62.00	gold quality
right frontal lobe	UBERON:0002810	61.65	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	60.94	gold quality
cerebral cortex	UBERON:0000956	60.42	gold quality
nucleus accumbens	UBERON:0001882	60.39	gold quality
caudate nucleus	UBERON:0001873	60.16	gold quality
skeletal muscle tissue	UBERON:0001134	59.36	silver quality
brain	UBERON:0000955	59.26	gold quality
lymph node	UBERON:0000029	58.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	56.97	gold quality
anterior cingulate cortex	UBERON:0009835	56.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.99	gold quality
muscle of leg	UBERON:0001383	54.45	gold quality
temporal lobe	UBERON:0001871	54.11	gold quality
Ammon’s horn	UBERON:0001954	53.92	gold quality
amygdala	UBERON:0001876	53.54	gold quality
duodenum	UBERON:0002114	53.51	gold quality
monocyte	CL:0000576	53.27	gold quality
gastrocnemius	UBERON:0001388	53.07	gold quality
multicellular organism	UBERON:0000468	52.39	gold quality
liver	UBERON:0002107	52.31	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.