LINC01409

Summary

LINC01409 (long intergenic non-protein coding RNA 1409, HGNC:50701) is a long non-coding RNA gene on chromosome 1p36.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50701
Approved symbol	LINC01409
Name	long intergenic non-protein coding RNA 1409
Location	1p36.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237491
Ensembl biotype	lncRNA
Entrez	105378580
RNAcentral	URS00026A1BF4 — lncRNA, 1505 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 46 — 46 lncRNA

ENST00000412115, ENST00000429505, ENST00000434264, ENST00000443772, ENST00000457084, ENST00000585745, ENST00000585768, ENST00000585826, ENST00000586288, ENST00000586928, ENST00000587530, ENST00000588951, ENST00000589531, ENST00000589899, ENST00000590848, ENST00000591440, ENST00000591702, ENST00000592547, ENST00000593022, ENST00000609830, ENST00000651411, ENST00000655384, ENST00000655765, ENST00000656571, ENST00000657896, ENST00000658648, ENST00000665719, ENST00000665867, ENST00000666217, ENST00000667728, ENST00000669749, ENST00000670700, ENST00000744198, ENST00000744199, ENST00000744200, ENST00000744201, ENST00000744202, ENST00000744203, ENST00000744204, ENST00000744205, ENST00000744206, ENST00000744207, ENST00000744208, ENST00000744209, ENST00000744210, ENST00000744211

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412115 — 5 exons

Exon	Start	End
ENSE00001615350	809622	810063
ENSE00001787632	807217	807323
ENSE00002781548	803951	804222
ENSE00002904472	804776	804966
ENSE00003853005	778747	779092

Expression profiles

Bgee: expression breadth ubiquitous, 172 present calls, max score 94.58.

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	94.58	gold quality
calcaneal tendon	UBERON:0003701	92.99	gold quality
right coronary artery	UBERON:0001625	92.33	gold quality
adenohypophysis	UBERON:0002196	91.39	gold quality
right testis	UBERON:0004534	90.78	gold quality
left testis	UBERON:0004533	90.77	gold quality
right hemisphere of cerebellum	UBERON:0014890	90.72	gold quality
cerebellar hemisphere	UBERON:0002245	90.31	gold quality
cerebellar cortex	UBERON:0002129	90.08	gold quality
right uterine tube	UBERON:0001302	89.61	gold quality
popliteal artery	UBERON:0002250	89.35	gold quality
tibial artery	UBERON:0007610	89.34	gold quality
pituitary gland	UBERON:0000007	89.14	gold quality
tibial nerve	UBERON:0001323	88.12	gold quality
right ovary	UBERON:0002118	88.10	gold quality
left coronary artery	UBERON:0001626	88.04	gold quality
right lobe of thyroid gland	UBERON:0001119	87.91	gold quality
aorta	UBERON:0000947	87.84	gold quality
cerebellum	UBERON:0002037	87.35	gold quality
left lobe of thyroid gland	UBERON:0001120	87.06	gold quality
endocervix	UBERON:0000458	86.96	gold quality
left ovary	UBERON:0002119	86.63	gold quality
ascending aorta	UBERON:0001496	86.60	gold quality
skin of leg	UBERON:0001511	86.52	gold quality
thoracic aorta	UBERON:0001515	86.47	gold quality
testis	UBERON:0000473	86.39	gold quality
minor salivary gland	UBERON:0001830	86.10	gold quality
rectum	UBERON:0001052	86.05	gold quality
body of uterus	UBERON:0009853	85.96	gold quality
coronary artery	UBERON:0001621	85.81	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.52

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.