LINC01412

Summary

LINC01412 (long intergenic non-protein coding RNA 1412, HGNC:50704) is a long non-coding RNA gene on chromosome 2q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50704
Approved symbol	LINC01412
Name	long intergenic non-protein coding RNA 1412
Location	2q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232606
Ensembl biotype	lncRNA
Entrez	101928455
RNAcentral	URS000075B531 — lncRNA, 430 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000413525, ENST00000696348, ENST00000813801, ENST00000813802, ENST00000813803, ENST00000813804, ENST00000813805, ENST00000813806, ENST00000813807, ENST00000813808, ENST00000813809, ENST00000813810, ENST00000813811, ENST00000813812, ENST00000813813, ENST00000813814, ENST00000813815, ENST00000813816

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413525 — 3 exons

Exon	Start	End
ENSE00001765550	144566433	144566570
ENSE00004214235	144579209	144579451
ENSE00004214248	144523884	144524145

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 94.88.

FANTOM5 (CAGE): breadth broad, TPM avg 0.9443 / max 27.0507, expressed in 465 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
22866	0.6077	310
22868	0.1818	78
22869	0.1308	70
22867	0.0241	8

Top tissues by expression

117 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.88	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	68.37	gold quality
monocyte	CL:0000576	66.89	gold quality
granulocyte	CL:0000094	64.53	gold quality
sural nerve	UBERON:0015488	64.05	silver quality
bone marrow cell	CL:0002092	63.08	silver quality
stromal cell of endometrium	CL:0002255	62.06	gold quality
gall bladder	UBERON:0002110	61.09	gold quality
lymph node	UBERON:0000029	60.79	gold quality
bone marrow	UBERON:0002371	58.69	gold quality
vermiform appendix	UBERON:0001154	57.12	gold quality
prefrontal cortex	UBERON:0000451	56.68	gold quality
calcaneal tendon	UBERON:0003701	53.63	gold quality
blood	UBERON:0000178	53.58	gold quality
smooth muscle tissue	UBERON:0001135	52.74	gold quality
tibial nerve	UBERON:0001323	52.44	gold quality
ovary	UBERON:0000992	52.33	gold quality
superior frontal gyrus	UBERON:0002661	52.27	gold quality
left ovary	UBERON:0002119	51.93	gold quality
right ovary	UBERON:0002118	51.44	gold quality
primary visual cortex	UBERON:0002436	51.34	gold quality
left coronary artery	UBERON:0001626	51.18	gold quality
right lung	UBERON:0002167	51.05	gold quality
hindlimb stylopod muscle	UBERON:0004252	50.94	gold quality
islet of Langerhans	UBERON:0000006	50.76	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.76	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.69	gold quality
adipose tissue	UBERON:0001013	50.64	gold quality
rectum	UBERON:0001052	50.61	gold quality
tibial artery	UBERON:0007610	50.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.