LINC01413

Summary

LINC01413 (long intergenic non-protein coding RNA 1413, HGNC:50705) is a long non-coding RNA gene on chromosome 15q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50705
Approved symbol	LINC01413
Name	long intergenic non-protein coding RNA 1413
Location	15q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260172
Ensembl biotype	lncRNA
Entrez	101928611
RNAcentral	URS0000759DCE — lncRNA, 986 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000564843, ENST00000662220, ENST00000772813, ENST00000772814, ENST00000772815

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564843 — 5 exons

Exon	Start	End
ENSE00002594689	57323846	57323932
ENSE00002599954	57320793	57320959
ENSE00002621097	57322905	57323127
ENSE00004137184	57319072	57319456
ENSE00004137188	57324850	57325039

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 88.68.

Top tissues by expression

73 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.68	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.49	gold quality
testis	UBERON:0000473	66.48	gold quality
right testis	UBERON:0004534	66.09	gold quality
left testis	UBERON:0004533	66.04	gold quality
minor salivary gland	UBERON:0001830	59.80	gold quality
pancreas	UBERON:0001264	59.75	gold quality
thoracic mammary gland	UBERON:0005200	54.72	gold quality
multicellular organism	UBERON:0000468	54.19	gold quality
duodenum	UBERON:0002114	53.72	gold quality
anterior cingulate cortex	UBERON:0009835	53.67	gold quality
left lobe of thyroid gland	UBERON:0001120	53.59	gold quality
blood	UBERON:0000178	52.70	gold quality
thyroid gland	UBERON:0002046	51.49	gold quality
bone marrow	UBERON:0002371	51.13	silver quality
vermiform appendix	UBERON:0001154	50.39	gold quality
right lobe of liver	UBERON:0001114	49.48	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.44	gold quality
placenta	UBERON:0001987	49.36	gold quality
monocyte	CL:0000576	49.02	silver quality
lymph node	UBERON:0000029	48.22	silver quality
liver	UBERON:0002107	47.94	silver quality
kidney	UBERON:0002113	47.65	silver quality
gall bladder	UBERON:0002110	47.62	gold quality
esophagus mucosa	UBERON:0002469	47.38	gold quality
adult mammalian kidney	UBERON:0000082	47.14	gold quality
islet of Langerhans	UBERON:0000006	47.12	gold quality
cortex of kidney	UBERON:0001225	46.96	silver quality
caudate nucleus	UBERON:0001873	46.76	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.53	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.