LINC01415

Summary

LINC01415 (long intergenic non-protein coding RNA 1415, HGNC:50709) is a long non-coding RNA gene on chromosome 18q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50709
Approved symbol	LINC01415
Name	long intergenic non-protein coding RNA 1415
Location	18q21.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00026208
Ensembl gene	ENSG00000267325
Ensembl biotype	lncRNA
Entrez	100132501
RNAcentral	URS0000ABD80C — lncRNA, 6201 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000587320, ENST00000588134, ENST00000656675, ENST00000657320, ENST00000657903, ENST00000662428, ENST00000663960, ENST00000729794, ENST00000729795

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587320 — 2 exons

Exon	Start	End
ENSE00002769594	55776727	55780030
ENSE00002970854	55780955	55781721

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 81.60.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.60	gold quality
sural nerve	UBERON:0015488	80.26	gold quality
ganglionic eminence	UBERON:0004023	68.29	gold quality
calcaneal tendon	UBERON:0003701	68.16	gold quality
colonic epithelium	UBERON:0000397	66.15	silver quality
cortical plate	UBERON:0005343	64.96	gold quality
ventricular zone	UBERON:0003053	64.53	gold quality
skeletal muscle tissue	UBERON:0001134	63.86	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	63.09	gold quality
placenta	UBERON:0001987	62.79	gold quality
prefrontal cortex	UBERON:0000451	61.12	gold quality
endometrium	UBERON:0001295	59.48	gold quality
smooth muscle tissue	UBERON:0001135	59.42	gold quality
omental fat pad	UBERON:0010414	58.77	gold quality
adipose tissue	UBERON:0001013	57.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.18	gold quality
subcutaneous adipose tissue	UBERON:0002190	56.99	gold quality
frontal cortex	UBERON:0001870	56.58	gold quality
temporal lobe	UBERON:0001871	56.33	gold quality
amygdala	UBERON:0001876	56.28	gold quality
Ammon’s horn	UBERON:0001954	55.94	gold quality
heart left ventricle	UBERON:0002084	55.89	gold quality
cerebral cortex	UBERON:0000956	55.20	gold quality
muscle of leg	UBERON:0001383	54.95	gold quality
lymph node	UBERON:0000029	54.74	gold quality
superior frontal gyrus	UBERON:0002661	54.65	gold quality
thoracic mammary gland	UBERON:0005200	54.14	gold quality
anterior cingulate cortex	UBERON:0009835	54.00	gold quality
heart	UBERON:0000948	53.72	gold quality
primary visual cortex	UBERON:0002436	53.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.