LINC01416

Summary

LINC01416 (long intergenic non-protein coding RNA 1416, HGNC:51645) is a long non-coding RNA gene on chromosome 18q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51645
Approved symbol	LINC01416
Name	long intergenic non-protein coding RNA 1416
Location	18q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260930
Ensembl biotype	lncRNA
Entrez	101927273
RNAcentral	URS000075B97A — lncRNA, 2325 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000563553, ENST00000654280, ENST00000655696, ENST00000765297, ENST00000765298, ENST00000765299, ENST00000765300

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563553 — 4 exons

Exon	Start	End
ENSE00002603682	55881688	55883669
ENSE00002607887	55898005	55898203
ENSE00002619016	55920162	55920199
ENSE00002625746	55898337	55898427

Expression profiles

Bgee: expression breadth broad, 61 present calls, max score 90.39.

Top tissues by expression

61 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.39	gold quality
uterine cervix	UBERON:0000002	79.40	gold quality
colonic epithelium	UBERON:0000397	79.37	gold quality
lung	UBERON:0002048	78.70	gold quality
pancreas	UBERON:0001264	76.39	silver quality
liver	UBERON:0002107	73.35	silver quality
colon	UBERON:0001155	69.60	gold quality
tonsil	UBERON:0002372	66.07	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.53	gold quality
saliva-secreting gland	UBERON:0001044	55.43	gold quality
skin of leg	UBERON:0001511	53.95	gold quality
prefrontal cortex	UBERON:0000451	52.29	gold quality
kidney	UBERON:0002113	50.73	gold quality
placenta	UBERON:0001987	50.22	gold quality
monocyte	CL:0000576	49.93	silver quality
blood	UBERON:0000178	49.43	gold quality
stomach	UBERON:0000945	48.11	silver quality
muscle of leg	UBERON:0001383	48.09	silver quality
ovary	UBERON:0000992	48.02	silver quality
frontal cortex	UBERON:0001870	47.66	gold quality
endometrium	UBERON:0001295	47.06	gold quality
primary visual cortex	UBERON:0002436	46.94	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	46.62	gold quality
gastrocnemius	UBERON:0001388	46.14	silver quality
heart	UBERON:0000948	46.05	silver quality
tibial artery	UBERON:0007610	45.96	silver quality
esophagus	UBERON:0001043	45.85	silver quality
urinary bladder	UBERON:0001255	45.25	silver quality
corpus callosum	UBERON:0002336	45.15	silver quality
heart left ventricle	UBERON:0002084	44.87	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.