LINC01425

Summary

LINC01425 (long intergenic non-protein coding RNA 1425, HGNC:50733) is a long non-coding RNA gene on chromosome 21q21.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50733
Approved symbol	LINC01425
Name	long intergenic non-protein coding RNA 1425
Location	21q21.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233997
Ensembl biotype	lncRNA
Entrez	101927821
RNAcentral	URS000075D2A9 — lncRNA, 774 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000425979, ENST00000430060

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425979 — 4 exons

Exon	Start	End
ENSE00001633794	21786299	21786391
ENSE00001772789	21784973	21785053
ENSE00004265710	21746928	21747043
ENSE00004265711	21797179	21797419

Expression profiles

Bgee: expression breadth broad, 77 present calls, max score 87.20.

Top tissues by expression

179 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	87.20	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.40	silver quality
ventricular zone	UBERON:0003053	68.10	gold quality
cortical plate	UBERON:0005343	63.34	gold quality
monocyte	CL:0000576	52.72	gold quality
gall bladder	UBERON:0002110	50.21	gold quality
Brodmann (1909) area 9	UBERON:0013540	49.09	gold quality
islet of Langerhans	UBERON:0000006	49.02	gold quality
prefrontal cortex	UBERON:0000451	48.64	gold quality
muscle of leg	UBERON:0001383	47.07	silver quality
gastrocnemius	UBERON:0001388	46.00	silver quality
right lobe of liver	UBERON:0001114	45.88	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	44.73	gold quality
popliteal artery	UBERON:0002250	44.44	silver quality
tibial artery	UBERON:0007610	44.43	silver quality
pancreas	UBERON:0001264	44.16	gold quality
aorta	UBERON:0000947	43.70	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
heart left ventricle	UBERON:0002084	43.35	silver quality
body of pancreas	UBERON:0001150	43.29	silver quality
amniotic fluid	UBERON:0000173	43.10	gold quality
descending thoracic aorta	UBERON:0002345	42.96	silver quality
cardiac ventricle	UBERON:0002082	42.78	silver quality
thoracic aorta	UBERON:0001515	42.71	silver quality
smooth muscle tissue	UBERON:0001135	42.62	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
ascending aorta	UBERON:0001496	42.48	silver quality
spinal cord	UBERON:0002240	42.46	silver quality
left adrenal gland	UBERON:0001234	42.07	gold quality
right hemisphere of cerebellum	UBERON:0014890	41.97	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.