LINC01427

Summary

LINC01427 (long intergenic non-protein coding RNA 1427, HGNC:50737) is a long non-coding RNA gene on chromosome 20p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50737
Approved symbol	LINC01427
Name	long intergenic non-protein coding RNA 1427
Location	20p11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225321
Ensembl biotype	lncRNA
Entrez	101929663
RNAcentral	URS0000759C04 — lncRNA, 520 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000420928, ENST00000635258, ENST00000635277, ENST00000635299, ENST00000723456, ENST00000723457, ENST00000723458, ENST00000723459, ENST00000723460

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420928 — 3 exons

Exon	Start	End
ENSE00001642851	22280228	22280540
ENSE00001700684	22282544	22282672
ENSE00001740315	22282354	22282415

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 70.60.

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	70.60	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.54	gold quality
blood	UBERON:0000178	55.82	gold quality
monocyte	CL:0000576	54.19	gold quality
islet of Langerhans	UBERON:0000006	53.49	gold quality
myometrium	UBERON:0001296	50.66	silver quality
gastrocnemius	UBERON:0001388	49.85	gold quality
right testis	UBERON:0004534	49.70	gold quality
testis	UBERON:0000473	49.69	gold quality
subcutaneous adipose tissue	UBERON:0002190	49.23	gold quality
amygdala	UBERON:0001876	48.67	gold quality
adipose tissue	UBERON:0001013	47.64	gold quality
thoracic mammary gland	UBERON:0005200	47.58	gold quality
small intestine Peyer’s patch	UBERON:0003454	47.41	gold quality
left testis	UBERON:0004533	47.24	gold quality
left adrenal gland cortex	UBERON:0035825	46.30	silver quality
omental fat pad	UBERON:0010414	45.10	gold quality
lymph node	UBERON:0000029	44.27	silver quality
heart left ventricle	UBERON:0002084	43.36	silver quality
left adrenal gland	UBERON:0001234	43.25	silver quality
body of pancreas	UBERON:0001150	42.93	silver quality
left coronary artery	UBERON:0001626	42.04	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	41.30	silver quality
urinary bladder	UBERON:0001255	41.04	silver quality
muscle layer of sigmoid colon	UBERON:0035805	40.98	gold quality
ascending aorta	UBERON:0001496	40.78	silver quality
esophagus	UBERON:0001043	40.69	silver quality
lower esophagus muscularis layer	UBERON:0035833	40.64	silver quality
left lobe of thyroid gland	UBERON:0001120	40.39	silver quality
tibial nerve	UBERON:0001323	40.21	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.