LINC01431

Summary

LINC01431 (long intergenic non-protein coding RNA 1431, HGNC:50744) is a long non-coding RNA gene on chromosome 20p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50744
Approved symbol	LINC01431
Name	long intergenic non-protein coding RNA 1431
Location	20p11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232645
Ensembl biotype	lncRNA
Entrez	100505683
RNAcentral	URS000075A94E — lncRNA, 647 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000442440, ENST00000444981, ENST00000452395, ENST00000686101, ENST00000686497, ENST00000687401, ENST00000693649, ENST00000701485, ENST00000701669, ENST00000722151, ENST00000722152, ENST00000722153, ENST00000722154, ENST00000722155, ENST00000722156, ENST00000722157, ENST00000722158, ENST00000722159, ENST00000722160

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000442440 — 3 exons

Exon	Start	End
ENSE00001622325	23357051	23357137
ENSE00003922825	23356586	23356969
ENSE00004042521	23357951	23358134

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 83.06.

FANTOM5 (CAGE): breadth broad, TPM avg 1.5315 / max 54.2742, expressed in 747 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
186686	1.1653	599
186685	0.3662	154

Top tissues by expression

252 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	83.06	gold quality
right testis	UBERON:0004534	82.24	gold quality
testis	UBERON:0000473	79.25	gold quality
right adrenal gland cortex	UBERON:0035827	73.01	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	72.55	gold quality
sural nerve	UBERON:0015488	71.93	gold quality
right uterine tube	UBERON:0001302	71.53	gold quality
right adrenal gland	UBERON:0001233	71.36	gold quality
bone marrow cell	CL:0002092	71.27	gold quality
adenohypophysis	UBERON:0002196	71.13	gold quality
metanephros cortex	UBERON:0010533	70.96	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	70.91	gold quality
right lobe of thyroid gland	UBERON:0001119	70.62	gold quality
pituitary gland	UBERON:0000007	69.84	gold quality
spinal cord	UBERON:0002240	69.63	gold quality
left adrenal gland cortex	UBERON:0035825	69.59	gold quality
mucosa of transverse colon	UBERON:0004991	69.18	gold quality
left adrenal gland	UBERON:0001234	69.16	gold quality
left lobe of thyroid gland	UBERON:0001120	68.85	gold quality
ventricular zone	UBERON:0003053	68.41	gold quality
adrenal cortex	UBERON:0001235	68.21	gold quality
islet of Langerhans	UBERON:0000006	68.20	gold quality
thyroid gland	UBERON:0002046	67.80	gold quality
tibial nerve	UBERON:0001323	67.77	gold quality
cortical plate	UBERON:0005343	67.43	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.12	gold quality
adrenal gland	UBERON:0002369	66.78	gold quality
cerebellar hemisphere	UBERON:0002245	66.49	gold quality
ganglionic eminence	UBERON:0004023	66.48	gold quality
cerebellar cortex	UBERON:0002129	66.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.34

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.