LINC01440

Summary

LINC01440 (long intergenic non-protein coding RNA 1440, HGNC:50762) is a long non-coding RNA gene on chromosome 20q13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50762
Approved symbol	LINC01440
Name	long intergenic non-protein coding RNA 1440
Location	20q13.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235166
Ensembl biotype	lncRNA
Entrez	102723578
RNAcentral	URS000075C930 — lncRNA, 651 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000416190, ENST00000450623, ENST00000596828, ENST00000598445, ENST00000608080, ENST00000610112, ENST00000625237, ENST00000627300, ENST00000627529, ENST00000629744, ENST00000654685, ENST00000660487, ENST00000662550, ENST00000664886, ENST00000667361, ENST00000827372, ENST00000827373, ENST00000827374, ENST00000827375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416190 — 8 exons

Exon	Start	End
ENSE00001607995	55468091	55468214
ENSE00001613214	55451539	55451849
ENSE00001639969	55448865	55448969
ENSE00001659026	55438129	55438303
ENSE00001708251	55425871	55426070
ENSE00001729001	55466817	55466940
ENSE00001745173	55423043	55423246
ENSE00001792319	55452337	55452433

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 88.01.

Top tissues by expression

72 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.01	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.44	gold quality
sural nerve	UBERON:0015488	69.22	gold quality
left testis	UBERON:0004533	66.11	gold quality
testis	UBERON:0000473	65.63	gold quality
right testis	UBERON:0004534	64.21	gold quality
pancreas	UBERON:0001264	60.67	gold quality
cortex of kidney	UBERON:0001225	59.67	gold quality
kidney	UBERON:0002113	57.50	gold quality
blood	UBERON:0000178	56.99	gold quality
muscle tissue	UBERON:0002385	56.90	gold quality
endometrium	UBERON:0001295	54.89	silver quality
lung	UBERON:0002048	53.71	gold quality
monocyte	CL:0000576	52.42	gold quality
multicellular organism	UBERON:0000468	51.65	gold quality
liver	UBERON:0002107	49.87	gold quality
right ovary	UBERON:0002118	49.09	gold quality
prefrontal cortex	UBERON:0000451	48.66	gold quality
gastrocnemius	UBERON:0001388	48.29	gold quality
lymph node	UBERON:0000029	48.06	silver quality
right lobe of liver	UBERON:0001114	47.81	silver quality
smooth muscle tissue	UBERON:0001135	47.35	gold quality
calcaneal tendon	UBERON:0003701	47.25	silver quality
right adrenal gland	UBERON:0001233	46.93	gold quality
frontal cortex	UBERON:0001870	45.64	gold quality
ascending aorta	UBERON:0001496	45.59	gold quality
hindlimb stylopod muscle	UBERON:0004252	45.19	silver quality
adrenal gland	UBERON:0002369	45.12	gold quality
right adrenal gland cortex	UBERON:0035827	44.96	gold quality
adult mammalian kidney	UBERON:0000082	44.80	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.69

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.