LINC01460

Summary

LINC01460 (long intergenic non-protein coding RNA 1460, HGNC:50858) is a long non-coding RNA gene on chromosome 2p23.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50858
Approved symbol	LINC01460
Name	long intergenic non-protein coding RNA 1460
Location	2p23.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205334
Ensembl biotype	lncRNA
Entrez	100129995
RNAcentral	URS0000A777FD — lncRNA, 2865 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000379677, ENST00000685646, ENST00000687139, ENST00000687803, ENST00000689220, ENST00000689224, ENST00000691312, ENST00000691814, ENST00000702883, ENST00000813600, ENST00000813601, ENST00000813602, ENST00000813603, ENST00000813604, ENST00000813605, ENST00000813606, ENST00000813607, ENST00000813608, ENST00000813609, ENST00000813610, ENST00000813611, ENST00000813612, ENST00000813613, ENST00000813614, ENST00000813615, ENST00000813616, ENST00000813617, ENST00000813618

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000379677 — 2 exons

Exon	Start	End
ENSE00004213856	27705786	27708496
ENSE00004213866	27715584	27715779

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 77.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0898 / max 14.0314, expressed in 22 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
27533	0.0898	22

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
apex of heart	UBERON:0002098	77.99	gold quality
heart left ventricle	UBERON:0002084	71.46	gold quality
heart	UBERON:0000948	68.15	gold quality
sural nerve	UBERON:0015488	66.78	silver quality
right atrium auricular region	UBERON:0006631	65.23	gold quality
skeletal muscle tissue	UBERON:0001134	56.64	silver quality
stromal cell of endometrium	CL:0002255	54.15	silver quality
hindlimb stylopod muscle	UBERON:0004252	52.70	silver quality
thoracic mammary gland	UBERON:0005200	52.62	gold quality
muscle of leg	UBERON:0001383	51.59	gold quality
myometrium	UBERON:0001296	51.24	gold quality
gastrocnemius	UBERON:0001388	50.79	gold quality
endometrium	UBERON:0001295	50.21	gold quality
skin of abdomen	UBERON:0001416	49.82	gold quality
prefrontal cortex	UBERON:0000451	49.65	silver quality
cerebellum	UBERON:0002037	49.33	silver quality
cerebellar cortex	UBERON:0002129	49.30	silver quality
cerebellar hemisphere	UBERON:0002245	49.29	silver quality
islet of Langerhans	UBERON:0000006	48.90	silver quality
blood	UBERON:0000178	48.60	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.44	silver quality
kidney	UBERON:0002113	48.27	gold quality
adult mammalian kidney	UBERON:0000082	48.02	gold quality
smooth muscle tissue	UBERON:0001135	47.71	gold quality
descending thoracic aorta	UBERON:0002345	47.41	gold quality
adrenal tissue	UBERON:0018303	47.16	silver quality
transverse colon	UBERON:0001157	47.03	gold quality
ovary	UBERON:0000992	46.96	gold quality
left ovary	UBERON:0002119	46.92	gold quality
right adrenal gland cortex	UBERON:0035827	46.89	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.