LINC01465

Summary

LINC01465 (long intergenic non-protein coding RNA 1465, HGNC:26364) is a long non-coding RNA gene on chromosome 12q14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26364
Approved symbol	LINC01465
Name	long intergenic non-protein coding RNA 1465
Location	12q14.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ25590
Ensembl gene	ENSG00000221949
Ensembl biotype	lncRNA
Entrez	283416
RNAcentral	URS000075A110 — lncRNA, 1700 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000408887

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000408887 — 1 exons

Exon	Start	End
ENSE00001567313	62601751	62603690

Expression profiles

Bgee: expression breadth ubiquitous, 145 present calls, max score 88.94.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1824 / max 24.9678, expressed in 74 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
131822	0.1824	74

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.94	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.76	gold quality
sural nerve	UBERON:0015488	70.03	gold quality
bone marrow cell	CL:0002092	69.75	silver quality
buccal mucosa cell	CL:0002336	67.68	gold quality
granulocyte	CL:0000094	66.59	gold quality
oviduct epithelium	UBERON:0004804	62.61	gold quality
stromal cell of endometrium	CL:0002255	61.71	gold quality
ventricular zone	UBERON:0003053	60.32	gold quality
cortical plate	UBERON:0005343	59.64	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.90	gold quality
ganglionic eminence	UBERON:0004023	57.86	gold quality
leukocyte	CL:0000738	57.83	gold quality
monocyte	CL:0000576	57.50	gold quality
islet of Langerhans	UBERON:0000006	56.58	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.16	gold quality
calcaneal tendon	UBERON:0003701	55.57	gold quality
upper leg skin	UBERON:0004262	54.94	gold quality
right lobe of thyroid gland	UBERON:0001119	54.10	gold quality
thyroid gland	UBERON:0002046	52.98	gold quality
left lobe of thyroid gland	UBERON:0001120	52.87	gold quality
bone marrow	UBERON:0002371	51.86	gold quality
left adrenal gland	UBERON:0001234	51.81	gold quality
descending thoracic aorta	UBERON:0002345	51.52	gold quality
fallopian tube	UBERON:0003889	51.49	gold quality
right adrenal gland	UBERON:0001233	51.37	gold quality
smooth muscle tissue	UBERON:0001135	51.31	gold quality
adrenal gland	UBERON:0002369	51.31	gold quality
right adrenal gland cortex	UBERON:0035827	51.24	gold quality
right lobe of liver	UBERON:0001114	51.19	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.84

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Identification and validation of a novel long non-coding RNA (LINC01465) in ovarian cancer. (PMID:36513868)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.