LINC01470

Summary

LINC01470 (long intergenic non-protein coding RNA 1470, HGNC:51105) is a long non-coding RNA gene on chromosome 5q33.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51105
Approved symbol	LINC01470
Name	long intergenic non-protein coding RNA 1470
Location	5q33.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249484
Ensembl biotype	lncRNA
Entrez	101927134
RNAcentral	URS0000759AB0 — lncRNA, 2177 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000503048, ENST00000506723, ENST00000511419, ENST00000522300, ENST00000584829, ENST00000653515, ENST00000659362, ENST00000663464, ENST00000665191, ENST00000760549, ENST00000812809

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503048 — 4 exons

Exon	Start	End
ENSE00002052985	153068712	153068813
ENSE00002063391	152684661	152684785
ENSE00002064967	152620505	152620782
ENSE00002070603	153223453	153223543

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 76.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0036 / max 5.5067, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
64447	0.0036	1

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.62	gold quality
corpus callosum	UBERON:0002336	73.57	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.69	gold quality
spleen	UBERON:0002106	66.40	gold quality
sural nerve	UBERON:0015488	65.15	silver quality
myometrium	UBERON:0001296	58.88	gold quality
liver	UBERON:0002107	58.63	gold quality
ganglionic eminence	UBERON:0004023	58.13	gold quality
ventricular zone	UBERON:0003053	57.81	silver quality
skeletal muscle tissue	UBERON:0001134	57.16	silver quality
monocyte	CL:0000576	56.43	gold quality
smooth muscle tissue	UBERON:0001135	55.88	gold quality
body of pancreas	UBERON:0001150	55.55	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.10	silver quality
placenta	UBERON:0001987	53.08	gold quality
prefrontal cortex	UBERON:0000451	52.66	gold quality
blood	UBERON:0000178	50.61	silver quality
islet of Langerhans	UBERON:0000006	49.56	gold quality
frontal cortex	UBERON:0001870	49.34	gold quality
colon	UBERON:0001155	49.26	gold quality
putamen	UBERON:0001874	49.20	gold quality
primary visual cortex	UBERON:0002436	48.95	silver quality
Ammon’s horn	UBERON:0001954	48.92	gold quality
intestine	UBERON:0000160	48.70	gold quality
kidney	UBERON:0002113	48.42	gold quality
multicellular organism	UBERON:0000468	48.27	gold quality
muscle layer of sigmoid colon	UBERON:0035805	48.19	gold quality
caudate nucleus	UBERON:0001873	48.06	gold quality
right lobe of thyroid gland	UBERON:0001119	47.80	gold quality
muscle of leg	UBERON:0001383	47.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.39

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.