LINC01471

Summary

LINC01471 (long intergenic non-protein coding RNA 1471, HGNC:51106) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51106
Approved symbol	LINC01471
Name	long intergenic non-protein coding RNA 1471
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000239921
Ensembl biotype	lncRNA
Entrez	101927149
RNAcentral	URS00007E508D — lncRNA, 1230 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000461398, ENST00000634643, ENST00000634757, ENST00000634855, ENST00000634941, ENST00000653243, ENST00000653663, ENST00000654267, ENST00000655078, ENST00000655132, ENST00000655862, ENST00000655927, ENST00000656000, ENST00000656238, ENST00000656310, ENST00000657345, ENST00000657746, ENST00000658009, ENST00000658306, ENST00000658380, ENST00000659207, ENST00000660032, ENST00000660160, ENST00000660384, ENST00000661186, ENST00000661192, ENST00000661372, ENST00000661801, ENST00000662405, ENST00000662765, ENST00000663252, ENST00000663921, ENST00000664267, ENST00000664674, ENST00000665475, ENST00000666120, ENST00000666461, ENST00000667355, ENST00000667598, ENST00000667958, ENST00000668773, ENST00000669420, ENST00000673823, ENST00000720907, ENST00000720908, ENST00000720909, ENST00000720910, ENST00000720911, ENST00000720912, ENST00000720913, ENST00000720914

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000461398 — 8 exons

Exon	Start	End
ENSE00001821593	127480690	127481374
ENSE00001856790	127499685	127499730
ENSE00001857489	127533577	127533769
ENSE00001874119	127485561	127485699
ENSE00001887086	127535186	127536812
ENSE00001912898	127534117	127534406
ENSE00001935684	127532385	127532443
ENSE00003787785	127536921	127536960

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 91.18.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0119 / max 13.5325, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
44368	0.0119	3

Top tissues by expression

97 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	91.18	gold quality
right testis	UBERON:0004534	90.91	gold quality
testis	UBERON:0000473	90.30	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.22	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.94	gold quality
adrenal tissue	UBERON:0018303	74.85	gold quality
lymph node	UBERON:0000029	69.95	gold quality
colonic epithelium	UBERON:0000397	68.45	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	58.98	gold quality
fundus of stomach	UBERON:0001160	57.74	gold quality
endometrium	UBERON:0001295	57.72	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.22	gold quality
body of stomach	UBERON:0001161	56.90	gold quality
monocyte	CL:0000576	56.54	gold quality
stomach	UBERON:0000945	55.96	gold quality
multicellular organism	UBERON:0000468	55.50	gold quality
blood	UBERON:0000178	55.31	gold quality
body of uterus	UBERON:0009853	55.19	gold quality
calcaneal tendon	UBERON:0003701	54.60	silver quality
skeletal muscle tissue	UBERON:0001134	54.44	gold quality
left coronary artery	UBERON:0001626	54.43	gold quality
cerebellar hemisphere	UBERON:0002245	53.96	gold quality
granulocyte	CL:0000094	53.92	gold quality
cerebellum	UBERON:0002037	53.68	gold quality
cerebellar cortex	UBERON:0002129	53.63	gold quality
skin of leg	UBERON:0001511	53.17	gold quality
adrenal gland	UBERON:0002369	53.09	gold quality
myometrium	UBERON:0001296	52.83	gold quality
hypothalamus	UBERON:0001898	52.38	gold quality
zone of skin	UBERON:0000014	52.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.