LINC01472

Summary

LINC01472 (long intergenic non-protein coding RNA 1472, HGNC:51107) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51107
Approved symbol	LINC01472
Name	long intergenic non-protein coding RNA 1472
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-59J16.2
Ensembl gene	ENSG00000240562
Ensembl biotype	lncRNA
Entrez	128071535
RNAcentral	URS000029ABF6 — lncRNA, 697 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000479610, ENST00000721161

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000479610 — 4 exons

Exon	Start	End
ENSE00001821750	127490358	127490787
ENSE00001830544	127489553	127489584
ENSE00001899551	127490077	127490200
ENSE00001950085	127489684	127489794

Expression profiles

Bgee: expression breadth broad, 24 present calls, max score 60.78.

Top tissues by expression

24 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	60.78	silver quality
Brodmann (1909) area 9	UBERON:0013540	53.73	gold quality
adrenal tissue	UBERON:0018303	50.99	gold quality
right testis	UBERON:0004534	49.80	gold quality
prefrontal cortex	UBERON:0000451	49.34	gold quality
left testis	UBERON:0004533	49.09	gold quality
testis	UBERON:0000473	48.76	gold quality
skin of leg	UBERON:0001511	48.40	gold quality
cerebellar hemisphere	UBERON:0002245	47.79	silver quality
muscle of leg	UBERON:0001383	47.27	gold quality
blood	UBERON:0000178	46.37	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	46.22	gold quality
gastrocnemius	UBERON:0001388	45.70	gold quality
heart left ventricle	UBERON:0002084	42.29	silver quality
ascending aorta	UBERON:0001496	41.80	silver quality
body of stomach	UBERON:0001161	40.68	silver quality
fallopian tube	UBERON:0003889	39.70	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.70	silver quality
hypothalamus	UBERON:0001898	37.67	silver quality
anterior cingulate cortex	UBERON:0009835	37.32	silver quality
prostate gland	UBERON:0002367	37.26	silver quality
right frontal lobe	UBERON:0002810	34.53	silver quality
omental fat pad	UBERON:0010414	33.39	silver quality
pituitary gland	UBERON:0000007	32.99	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.