LINC01473

Summary

LINC01473 (long intergenic non-protein coding RNA 1473, HGNC:51109) is a long non-coding RNA gene on chromosome 2q32.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51109
Approved symbol	LINC01473
Name	long intergenic non-protein coding RNA 1473
Location	2q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237877
Ensembl biotype	lncRNA
Entrez	101927217
RNAcentral	URS000075E7AB — lncRNA, 605 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 109 — 109 lncRNA

ENST00000419719, ENST00000427108, ENST00000456653, ENST00000655126, ENST00000656786, ENST00000658984, ENST00000658990, ENST00000659351, ENST00000659769, ENST00000661574, ENST00000665629, ENST00000666677, ENST00000667056, ENST00000667839, ENST00000667983, ENST00000668977, ENST00000668985, ENST00000669598, ENST00000670612, ENST00000671116, ENST00000671599, ENST00000701778, ENST00000703419, ENST00000738362, ENST00000738363, ENST00000738364, ENST00000738365, ENST00000738366, ENST00000738367, ENST00000738368, ENST00000738369, ENST00000738370, ENST00000738371, ENST00000738372, ENST00000738373, ENST00000738374, ENST00000738375, ENST00000738376, ENST00000738377, ENST00000738378, ENST00000738379, ENST00000738380, ENST00000738381, ENST00000738382, ENST00000738383, ENST00000738384, ENST00000738385, ENST00000738386, ENST00000738387, ENST00000738388, ENST00000738389, ENST00000738390, ENST00000738391, ENST00000738392, ENST00000738393, ENST00000738394, ENST00000738395, ENST00000738396, ENST00000738397, ENST00000738398, ENST00000738399, ENST00000738400, ENST00000738401, ENST00000738402, ENST00000738403, ENST00000738404, ENST00000738405, ENST00000738406, ENST00000738407, ENST00000738408, ENST00000738409, ENST00000738410, ENST00000738411, ENST00000738412, ENST00000738413, ENST00000738414, ENST00000738415, ENST00000738416, ENST00000738417, ENST00000738418, ENST00000738419, ENST00000738420, ENST00000738421, ENST00000738422, ENST00000738423, ENST00000738424, ENST00000738425, ENST00000738426, ENST00000738427, ENST00000738428, ENST00000738429, ENST00000738430, ENST00000738431, ENST00000738432, ENST00000738433, ENST00000738434, ENST00000738435, ENST00000738436, ENST00000738437, ENST00000738438, ENST00000738439, ENST00000738440, ENST00000738441, ENST00000738442, ENST00000738443, ENST00000738444, ENST00000738445, ENST00000738446, ENST00000738447

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419719 — 7 exons

Exon	Start	End
ENSE00001596192	186081330	186081416
ENSE00001631749	186039500	186039555
ENSE00001738931	186083154	186083221
ENSE00003856298	186326275	186326360
ENSE00003857620	186038331	186038435
ENSE00004073594	186033605	186033802
ENSE00004073611	186215019	186215090

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 82.99.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0787 / max 44.3003, expressed in 18 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
32784	0.0787	18

Top tissues by expression

135 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	82.99	gold quality
calcaneal tendon	UBERON:0003701	81.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.63	gold quality
sural nerve	UBERON:0015488	79.97	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.60	gold quality
adrenal tissue	UBERON:0018303	77.79	gold quality
colonic epithelium	UBERON:0000397	75.07	gold quality
tonsil	UBERON:0002372	74.32	gold quality
ventricular zone	UBERON:0003053	72.50	gold quality
ganglionic eminence	UBERON:0004023	71.96	gold quality
bone marrow cell	CL:0002092	71.66	gold quality
pituitary gland	UBERON:0000007	70.19	gold quality
adenohypophysis	UBERON:0002196	69.96	gold quality
skeletal muscle tissue	UBERON:0001134	68.29	gold quality
left ovary	UBERON:0002119	67.60	gold quality
tibial nerve	UBERON:0001323	67.56	gold quality
skin of abdomen	UBERON:0001416	67.48	gold quality
urinary bladder	UBERON:0001255	67.42	gold quality
thyroid gland	UBERON:0002046	67.41	gold quality
ovary	UBERON:0000992	67.25	gold quality
left lobe of thyroid gland	UBERON:0001120	66.86	gold quality
liver	UBERON:0002107	66.71	gold quality
prostate gland	UBERON:0002367	66.69	gold quality
zone of skin	UBERON:0000014	66.50	gold quality
uterine cervix	UBERON:0000002	66.44	gold quality
right lobe of liver	UBERON:0001114	66.12	gold quality
right uterine tube	UBERON:0001302	66.12	gold quality
kidney	UBERON:0002113	65.96	gold quality
adrenal gland	UBERON:0002369	65.63	gold quality
skin of leg	UBERON:0001511	65.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.77

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Roles of LINC01473 and CD74 in osteoblasts in multiple myeloma bone disease. (PMID:35145037)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.