LINC01474

Summary

LINC01474 (long intergenic non-protein coding RNA 1474, HGNC:51111) is a long non-coding RNA gene on chromosome 9q21.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:51111
Approved symbol	LINC01474
Name	long intergenic non-protein coding RNA 1474
Location	9q21.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236849
Ensembl biotype	lncRNA
Entrez	101927258
RNAcentral	URS000075B79A — lncRNA, 656 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000423171, ENST00000449235, ENST00000453787, ENST00000653947, ENST00000654093, ENST00000656141, ENST00000658474, ENST00000749221, ENST00000749222, ENST00000749223

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423171 — 4 exons

Exon	Start	End
ENSE00001701683	72874016	72874135
ENSE00001779199	72872109	72872231
ENSE00003886044	72873027	72873151
ENSE00003886410	72871725	72872016

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 77.15.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0332 / max 9.7932, expressed in 11 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
100969	0.0332	11

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	77.15	gold quality
mucosa of stomach	UBERON:0001199	76.96	gold quality
liver	UBERON:0002107	74.42	gold quality
descending thoracic aorta	UBERON:0002345	74.09	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.99	gold quality
tibial nerve	UBERON:0001323	72.45	gold quality
muscle layer of sigmoid colon	UBERON:0035805	71.78	gold quality
right lung	UBERON:0002167	71.65	gold quality
endocervix	UBERON:0000458	69.87	gold quality
colonic epithelium	UBERON:0000397	69.55	gold quality
calcaneal tendon	UBERON:0003701	68.48	gold quality
muscle tissue	UBERON:0002385	67.90	gold quality
uterine cervix	UBERON:0000002	67.21	gold quality
skeletal muscle tissue	UBERON:0001134	67.12	gold quality
endometrium	UBERON:0001295	67.03	gold quality
body of uterus	UBERON:0009853	66.57	gold quality
sural nerve	UBERON:0015488	66.46	gold quality
right atrium auricular region	UBERON:0006631	66.06	gold quality
myometrium	UBERON:0001296	65.74	gold quality
right ovary	UBERON:0002118	65.69	gold quality
lower esophagus mucosa	UBERON:0035834	65.58	gold quality
omental fat pad	UBERON:0010414	65.53	gold quality
fundus of stomach	UBERON:0001160	65.34	gold quality
colon	UBERON:0001155	65.31	gold quality
ovary	UBERON:0000992	64.94	gold quality
left ovary	UBERON:0002119	64.89	gold quality
adipose tissue	UBERON:0001013	64.87	gold quality
thoracic aorta	UBERON:0001515	64.85	gold quality
vagina	UBERON:0000996	64.78	gold quality
ectocervix	UBERON:0012249	64.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.